Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq118 143 2e-29 seq54 104 2e-17 seq2 95.1 8e-15 seq66 82.4 5e-11 >seq118 Length=4884071 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | |||||||||||| | |||| || ||||||| ||||| ||||| || Sbjct 2270136 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGTTCACCTTCTGGATGTTGTAGTCAGAC 2270195 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| ||||| ||||| | ||| |||||||| | ||||||||| | || Sbjct 2270196 AGGGTACGCCCATCTTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2270255 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT-ATCGAT-----TCATTGGCC 34924 | ||||||||||| | || || ||||| || || | | | ||| || | Sbjct 2270256 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAGTGGTGGGTGTCACTGATC 2270313 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||| |||||||| || ||||||||||| | ||||||||||| Sbjct 2270314 TCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCATGAAGATCTGCAT 2270366 >seq54 Length=16718083 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | | | || ||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 7272815 CCTCCCCTAAGGCACCGGGCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7272756 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| || || |||| |||| ||||| | ||| |||||||| | |||||||| | || Sbjct 7272755 AGGGTGTGCCCATCTACCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCGGG-GGA 7272697 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | |||||||| | | || || |||| | | || | ||| | | ||| || Sbjct 7272696 ATGACCTCCTTGCCTTGGATCTTGGCCTTGATGTTCTCAATGGTGTCACTAGGCTCCACC 7272637 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || ||||||| | | |||||||||| | ||||||||||| Sbjct 7272636 TCAAGAGTGTTGGTCTTACTCATGAGGGTCTTCATGAAGATCTGCAT 7272590 >seq2 Length=58787292 Score = 95.1 bits (104), Expect = 8e-15 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | |||||||||| | | |||| ||||||||| ||||| ||||| || Sbjct 1920368 CCTCCCCTCAGGCACAGGACCAGGGGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1920427 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||| | |||| ||||| | || ||||| |||| ||| | ||||| || | || Sbjct 1920428 AGGGTGCACCCATCTTCCAGCTCCTC-CCGGCAAAGACCAGCCTCTGCTGCTCAGGGGGT 1920486 Query 34871 ACCCCCTCCTTGTC 34884 | ||||||||||| Sbjct 1920487 ATGCCCTCCTTGTC 1920500 >seq66 Length=13365902 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||| ||| | ||| ||| ||||| ||||||||||| || Sbjct 1687894 CCACCCCTCAGACGGAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCAGAA 1687835 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || |||| |||| ||||| ||||| || |||||||| || | |||||||| Sbjct 1687834 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATGAGCCTCTGCTGGTC 1687782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325681530927341