Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq115 89.7 4e-13 seq15 89.7 4e-13 >seq115 Length=5499404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| ||||| | | || | ||| | || || Sbjct 2584496 ATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTATGTCCATCTTTCAGGTG 2584555 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | |||| ||||||||||| || ||||| ||||| || ||| | || | Sbjct 2584556 CTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCCTCCTTATCTGG--ATCT 2584613 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 | | ||| ||| ||||| ||||| | |||| | || || || || || ||| Sbjct 2584614 TGGTTTTTACATTTTCTGTTGTGTCCAAGGGTTCAGTCTTGAGCGTGATGGTCTTCTCAG 2584673 Query 29762 TTAAGGTTTTAACAAATATCTGCATTTT 29789 | | |||||| ||||| ||||| || || Sbjct 2584674 TAAGGGTTTTTACAAAAATCTGGATCTT 2584701 >seq15 Length=31830809 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| ||||| | | || | || || ||||| Sbjct 647127 ATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACATCCATTTTCCAGTTG 647186 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || ||||| | |||| ||||||||||| || ||||| || || || || || | || Sbjct 647187 CTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTT 647246 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||| || |||||| || |||| || || || | || || || || | Sbjct 647247 GGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCATGATGGTCTTCCCCGA 647306 Query 29763 TAAGGTTTTAACAAATATCTGC 29784 | |||||| ||||| || ||| Sbjct 647307 GAGGGTTTTTACAAAAATGTGC 647328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385205871295299