Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq15 114 3e-20 seq51 105 1e-17 seq13 102 2e-16 seq115 96.9 7e-15 seq113 89.7 1e-12 seq66 87.8 4e-12 >seq15 Length=31830809 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || |||||||| | | | | || | ||| ||||| Sbjct 647128 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACATCCATTTTCCAGTTGC 647187 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 647188 TTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 647247 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||||| || || || ||||| || || | | || ||||| || | Sbjct 647248 GCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCATGATGGTCTTCCCCGAG 647307 Query 82788 AACGTCTTTACAAATATCTGC 82808 | || |||||||| || ||| Sbjct 647308 AGGGTTTTTACAAAAATGTGC 647328 >seq51 Length=17756649 Score = 105 bits (116), Expect = 1e-17 Identities = 134/180 (74%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 82632 TTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691 || |||||| | | | | | || ||||| | ||| || ||||||||||| || ||||| Sbjct 16615618 TTGTAATCAAACAAAGTACATCCATCTTCCACTTGCTTACCAGCAAAGATCAG-CTTTGC 16615560 Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 |||| ||||| ||||||| ||| || ||||| |||||||||||||| |||||||| Sbjct 16615559 TGATTAGGAGGAATTCCTT----ATCCTGGATCTTGGCTTTTACATTTTCTATCGTATCC 16615504 Query 82752 TTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA-CGTCTTTACAAATATCTGCAT 82810 | ||||| || || | | || ||||| ||| ||| || |||||||| ||||| || Sbjct 16615503 TAGGGTTCAACCTCGAGCATGATGGTCTT-CCTCACAAGGGTTTTTACAAAAATCTGTAT 16615445 >seq13 Length=33879094 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 || || |||||||| | | | | || ||||| ||||| || ||||||||||| || | | Sbjct 14752926 ATGTTGTAATCAGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCAT 14752985 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 || ||||| |||| |||||||||||||| || ||||| || ||||||||||| || Sbjct 14752986 TGCTGATCAGGAGCAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTAT 14753041 >seq115 Length=5499404 Score = 96.9 bits (106), Expect = 7e-15 Identities = 144/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || |||||||| | | | || |||| || || Sbjct 2584497 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTATGTCCATCTTTCAGGTGC 2584556 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || ||||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 2584557 TTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCCTCCTTATC-TGGATCTTG 2584615 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | |||||||||||| | || || ||||| | | || || ||||| | || Sbjct 2584616 GTTTTTACATTTTCTGTTGTGTCCAAGGGTTCAGTCTTGAGCGTGATGGTCTTCTCAGTA 2584675 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || |||||||| ||||| || Sbjct 2584676 AGGGTTTTTACAAAAATCTGGAT 2584698 >seq113 Length=5825819 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| || ||||| |||| ||||| ||||||||| Sbjct 3733337 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCAGATCGGGAGGAATTCCTTCC 3733396 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||| || ||| ||| || |||| || || | || Sbjct 3733397 TTATCCTGGATCTTGGCCTTT--ATGTTCTCCCGTGTCCGACAGTTCAACCTCGAGTGTG 3733454 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| |||| | || |||| || ||||| || Sbjct 3733455 ATGGTCTTCCCTGGGAGGGTTATTACGAAAATCTGTAT 3733492 >seq66 Length=13365902 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || ||||||||||| || |||||||| || ||||| ||||| Sbjct 1687894 CCACCCCTCAGACGGAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCAGAA 1687835 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || || ||||| || || || || || || || Sbjct 1687834 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATGAGCCTCTGCTGGTCAGGGGGG 1687775 Query 82704 ATTCCTTC 82711 || ||||| Sbjct 1687774 ATGCCTTC 1687767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981791486342421