Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq54 87.8 2e-12 seq13 87.8 2e-12 seq12 82.4 7e-11 >seq54 Length=16718083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| | || | |||||||||| Sbjct 7272786 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATCTACCAGCTGCTTGCT 7272727 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| || ||| | |||||| | |||||| ||| Sbjct 7272726 GGCAAAGATCAGCCTCTGCTGGTCGGG-GGAATGACCTCCTTGCCTTGGATCTTGGCCTT 7272668 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | |||||||| || | ||| ||| || | | || || Sbjct 7272667 GATGTTCTCAATGGTGTCACTAGGCTCCACCTCAAGAGTGTTGGTCTTACTCATGAGGGT 7272608 Query 133643 TTTTACGAAAATCTGCAT 133660 || | ||| |||||||| Sbjct 7272607 CTTCATGAAGATCTGCAT 7272590 >seq13 Length=33879094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 || ||||| ||||| | |||||| |||||||||||||| |||| ||||| ||| ||| Sbjct 19878331 TATTCTACTATCTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGTTGGTTG 19878272 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | ||||| | || ||||| ||||||||||| Sbjct 19878271 CTCTTCCGATTGCAGGAATCTTTGTAGAGCATGTACGG 19878234 >seq12 Length=33761702 Score = 82.4 bits (90), Expect = 7e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||||| || | || |||| | |||||||||| | ||||||||||||| Sbjct 23446793 TCTTCTAGCTGCTTGCTGGCAAAGATAAGCCCCCGCTGGTCGGG-GAGATGCCTTCCTTG 23446735 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| |||| | ||||||| | || | ||||| | Sbjct 23446734 TCTTGGATCTTGGCCTTGACATTCTCAGTGGTGTTGCTGGGCTCTGCCTCAAGGGTGATG 23446675 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 || || || | || || || ||||| ||| Sbjct 23446674 GTCTTACCAGAGAGGGTCTTCACGAAGATC 23446645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483403644604360