Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq111 212 7e-50 seq26 179 4e-40 seq10 145 9e-30 >seq111 Length=6053440 Score = 212 bits (234), Expect = 7e-50 Identities = 614/933 (66%), Gaps = 19/933 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || |||||||||| || || | ||| ||| Sbjct 2827712 CCAGGGCTTTATGCCTCAGATGCTCATCCAGACACTGGATGGCAAAGAGGTCCACATCCA 2827771 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || || | ||| || || || ||||| | | || || | Sbjct 2827772 TGTCAAACTTATTGGCAAAAAAGTGGTGT---TTGCGCAGCATCCAGGTCAAGTCACCGG 2827828 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || | ||||||| |||||||| || ||| ||| || ||||| | || || | Sbjct 2827829 CTCCAAAAATGCACACGCTGCGCACGTGGACACCGTCGCAGGGTGGATAGGGAGCGCCCT 2827888 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 || || || || ||| |||| |||||||| || ||||| | | |||||||||||| | Sbjct 2827889 TGTTAACGTCACCTTCGAAGTACTGCCACTTGACAAACCTGGCAACAGCCTGCATGTCAG 2827948 Query 162299 AGGTGTCGTACTTGTACACTGA-CGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | ||||||||||| || | ||| | | || || | |||| | ||||| | Sbjct 2827949 ACAGGTCGTACTTGTGG-CTCAGCGGTAGAGAACCTGGGGCCTCCGGGACCCTCTGGATC 2828007 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || || || || || || |||| || |||||||||||||| | Sbjct 2828008 GTGGCCCAGAGATACTCATCAGGGCTGTATGTGTCCTGCGCCCACTCCATGAACTTTTGG 2828067 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | || || | || | ||| || || |||| | || | ||| || || || Sbjct 2828068 ATGTCTTCATTTTCCAGCACGTAGCCCACATACTCCCTGCTGACCACAAAATAGGCACTC 2828127 Query 162478 CC--AGAAAACACGGGTAT-GCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGT-TGAC 162533 || |||||| | | || | | || ||||| || |||| | || |||| || | Sbjct 2828128 CCTGAGAAAAGAGGCGTTTTGAGT---GGAGGCTGCGTTTTGGCGGTGCCTGTGTCTGTC 2828184 Query 162534 TACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 | | |||| || | ||| ||| | | ||||||| | ||| || | | Sbjct 2828185 -AGCTTTCCATCGATGACTGCGTAATGCCTTTTCCACCTTTCTGCTTTATGGGATGGCAT 2828243 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | || || || || |||| |||| |||| ||| |||| | ||||| || || Sbjct 2828244 CTTCTCTGTTTCCAGGTTGTTTTCACCCATGAAGGACTTGAGCTTCCTGACCATTTCCAG 2828303 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| ||||| || | || || || || || | || ||||| | | || Sbjct 2828304 GTTGGTTTTAATAGGAAAATCCATCCCACAAAGGTTGATCAAGTACTTCCAGTCTGCACT 2828363 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | || ||| || |||| | ||||| || || ||||| || ||||||||||||||||| Sbjct 2828364 CATTCTGTAGAGGTCCTTCATGCAGTTGAGGTCAGCCTGCACCCGACTCCACGACGCGTA 2828423 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 || |||||||||||| | |||| ||||||||||| |||||| || | || || | Sbjct 2828424 GACCACGCTCTCCAACTGACTGGCCACAAAGACATTCCTGAAACAGGACGCGATGCCTTT 2828483 Query 162834 CACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||| | ||| | | | | |||| | ||| | || || || | ||| || | ||| Sbjct 2828484 CACTG-CAGCTACA--AAGGAGTCCTCTGATTTTTTGTCCACATGGATGCAATAGAAATT 2828540 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| || |||||||| || | || || | ||| || || || || || ||||| Sbjct 2828541 CTGAGGCATATAAATGGCCCTTAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCAC 2828600 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| || || ||||| | || ||||| Sbjct 2828601 TATGGAATATGCAATCGGGAAGCCTGCTTCCTC 2828633 >seq26 Length=25788011 Score = 179 bits (198), Expect = 4e-40 Identities = 237/326 (73%), Gaps = 2/326 (1%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || ||||| || ||||||||||| || | || Sbjct 12686482 CATAGAGGGTAAGGCAGGCTGTTCCTGAGATCTTTCCAGAGCCAAAAGTATTGAAGAGAC 12686423 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| || |||| || | ||||| ||||| | | || || |||| Sbjct 12686422 ACATGTAACACCCTTCATCTTCCAGTGTTGCATTCCAGAAAGTGATGGCTGACTT-CTGA 12686364 Query 171891 -GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGA 171949 |||| |||| || |||||||||| |||| | || | |||||||| |||| ||||| Sbjct 12686363 AGTCCTAGTTCGGTGATGTTCACCCTGTCCCTATAGGCGGGCTGGACCACAATCCCGTGG 12686304 Query 171950 TTCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACT 172009 ||| ||| | ||| |||||||||| ||||| |||||| | |||||||| || || Sbjct 12686303 GTCTTACTGTAGGTGACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACA 12686244 Query 172010 ATTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAAT 172069 |||| ||| | | ||||| ||||| |||||||| || ||||||||||||| | Sbjct 12686243 ATTACGGCTTGCTGGGAAGTTTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGA 12686184 Query 172070 TCCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || |||| || Sbjct 12686183 TGTCTTTCATCCTGGGTAGCCACTTG 12686158 Score = 154 bits (170), Expect = 2e-32 Identities = 175/234 (75%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 171517 GTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACT 171576 ||| || |||| ||||||||| | || ||| |||||||||| | || || ||||| Sbjct 12688969 GTCAGTCACAGCCCCCAAGTGCAGCACCCGGCAGATCACCTCCT---TCCCAACCTGACT 12688913 Query 171577 TTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAAC 171636 || | |||| | || || || |||||||| |||||||| ||||| ||| |||| | ||| Sbjct 12688912 CTTGGCATCTCTGACCTGGAGGATGCTAGTGACAGATGTGGTCCCATTAGGATGCAAAAC 12688853 Query 171637 GGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGG 171696 | | ||||||||| || || || | |||||||| ||||| | || ||||| || || Sbjct 12688852 ACTCTCAGTACTATTATCAATCCCTGTCCCGGCAACCTTCCAGGAGATCACAGGCGCCGG 12688793 Query 171697 TCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGTG 171750 | ||||| ||||||||||| ||||||| | |||||| ||||| | ||||| Sbjct 12688792 GCGGGCAGTGGCAGAGCAAGTGATGTTTAGTTGATCTTCAAAGAAATTGTAGTG 12688739 >seq10 Length=36757452 Score = 145 bits (160), Expect = 9e-30 Identities = 438/664 (66%), Gaps = 17/664 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| |||||| | | |||||| |||| | || | || | | Sbjct 22315240 TCCAGTTAAAGTAGCTAAGATATAACTTATTGTTTTTGTCGACTTCCTTTAAGTACTTTG 22315181 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| || ||||| | ||| | || | |||| Sbjct 22315180 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGTATGAATGAATCTGCTGGAATATAAT 22315121 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| | || Sbjct 22315120 TCTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGTACAGATCCAGCCAAGAAAGCAT 22315061 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||||| ||||| || || || || |||| | ||||| ||||| | ||||||||||| Sbjct 22315060 TATAGAGCTTTTCTGTTATGTAATCTTTGTGGATTGAGTTTTCAAAAGAGAGATAGAATT 22315001 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| |||| | || |||| | ||| | ||| ||||| | | | Sbjct 22315000 TACAAGTAGATATGGTAG--GAATCAAGTTCTTATCATTCACATATTCTCCAAACGCTTG 22314943 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACGT 177243 || || || || || || ||| || ||||| ||| || || || | | ||| Sbjct 22314942 ACCATAGGTGTGGATTTCAATACTTTTGCTCAGCTCATTGTAATA-CTTGACCCTGGCGT 22314884 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||| || || ||||| |||||||| ||| || | Sbjct 22314883 GCTCAGGGTTCCAGTTACTCACAACCCAACACACCAACTT-CTCTTTGCTGGGCACCTCA 22314825 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 |||| |||| || | | || | || | | ||||| ||||| || |||||||| Sbjct 22314824 A---ATACGAATGG-GTTTGTGCTTACTGTCAAGAAGCCATAAGGCACTTGGATATCCGA 22314769 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 ||| || | ||| |||| || || ||||| || | || || | || |||| |||| Sbjct 22314768 GTCTCGGCGGTAGGTTAGAGTCAGGTTGAACAGATGCTCAATGCCACTCTTTTG--GGGG 22314711 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 ||| | | || ||||| | |||||||| ||||| || || |||| || || | || | Sbjct 22314710 GTGTGAGTCGGTGATTCCAGATTCATCCAAATCCATTTCTGGAAGGGAGGCCTAGCTTGC 22314651 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| | || |||| ||| || |||| |||||| | | || |||| | | Sbjct 22314650 TGAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGGTGTATCAAGACTGCATGTGAT 22314591 Query 177540 TTGT 177543 |||| Sbjct 22314590 TTGT 22314587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578411472894400