Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 1e-13 seq113 86.0 1e-11 seq66 86.0 1e-11 >seq13 Length=33879094 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || ||| | || ||||| Sbjct 14753032 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTGCTCCTGATCAGCAATGGCTGATCTTT 14752973 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | ||||||||| | | || ||||| Sbjct 14752972 GCTGGTAAGCAACTGGAAGATGGATGTACTTTGTCTGATTACAACATTTAAAAGGAGTCC 14752913 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 | ||||| ||||| |||||||| || Sbjct 14752912 ATCCTTCATCTTGTGTTGAGACTCCG 14752887 >seq113 Length=5825819 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAA-AACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | || ||| ||| |||| || || ||||| | || || ||| || || Sbjct 3733489 CAGAT-TTTCGTAATAACCCTCCCAGGGAAGACCATCACACTCGAGGTTGAACTGTCGGA 3733431 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| ||||| || || || ||||||||| || || || Sbjct 3733430 CACGGGAGAA-CA-TAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCCGATCTGCA 3733373 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| || ||||| || || ||||| ||||||||||| | |||||| ||| ||||||| Sbjct 3733372 AAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGATGTACTTTGTCCGGTTACAAC 3733315 >seq66 Length=13365902 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||| ||||| ||||||||||||| |||||||||| | ||| | |||||||||||||| Sbjct 1687871 GTGCAGAGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGCGGCCATCTTCCAGCTG 1687812 Query 204829 CTTTCCGGCGAAGATAAGCC 204848 ||| || |||||||| |||| Sbjct 1687811 CTTGCCCGCGAAGATGAGCC 1687792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181777811637719