Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq26 197 2e-45 seq1 183 4e-41 seq5 150 2e-31 seq19 118 1e-21 seq20 87.8 2e-12 >seq26 Length=25788011 Score = 197 bits (218), Expect = 2e-45 Identities = 237/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || |||| ||||||||||| || ||||||||||| || || ||| | | ||| || Sbjct 12686158 CAAGTGGCTACCCAGGATGAAAGACATCTGCTGAACACACCTGCATCCTTAAGATGTTCT 12686217 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| ||||| ||| | | | ||||| || |||||||||| ||| | | ||| Sbjct 12686218 CTGCAAACTTCCCAGCAAGCCGTAATTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCA 12686277 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || | || || ||||||| | ||||||||||| || |||| |||| Sbjct 12686278 GAAAACATGGTCACCTACAGTAAGACCCACGGGATTGTGGTCCAGCCCGCCTATAGGGAC 12686337 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 | | | ||||||||| | || ||||| || || ||| |||||||||| |||||| | || Sbjct 12686338 AGGGTGAACATCACCGAACTAGGACTTCAGAAGTCAGCCATCACTTTCTGGAATGCAACA 12686397 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | || || || ||||| |||| || ||||| || || ||||| ||||| || ||||| Sbjct 12686398 CTGGAAGATGAAGGGTGTTACATGTGTCTCTTCAATACTTTTGGCTCTGGAAAGATCTCA 12686457 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || |||||||| ||||||| Sbjct 12686458 GGAACAGCCTGCCTTACCCTCT 12686479 Score = 161 bits (178), Expect = 1e-34 Identities = 202/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || || ||||| || || || |||||||| || Sbjct 12688718 GTACAGCCCATAGTATTCCTTCACTACAATTTCTTTGAAGATCAACTAAACATCACTTGC 12688777 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| |||||||||| | ||| ||| | |||||| || | ||| ||| ||||| Sbjct 12688778 TCTGCCACTGCCCGCCCGGCGCCTGTGATCTCCTGGAAGGTTGCCGGGACAGGGATTGAT 12688837 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| | ||| ||| ||||||| || || ||||| || || | ||||| Sbjct 12688838 AATAGTACTGAGAGTGTTTTGCATCCTAATGGGACCACATCTGTCACTAGCATCCTCCAG 12688897 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || | ||| ||||||||||| | || |||||||| ||||||| ||| |||| |||| Sbjct 12688898 GTCAGAGATGCCAAGAGTCAGGTTGGGAAGGAGGTGATCTGCCGGGTGCTGCACTTGGGG 12688957 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 ||| ||| ||| | | ||||| | | ||| |||| Sbjct 12688958 GCTGTGACTGACTACAAGAAAACTCTGAACAAAGGTA 12688994 >seq1 Length=63520090 Score = 183 bits (202), Expect = 4e-41 Identities = 145/174 (83%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 146973 GTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGC 147032 ||| ||| || |||| || ||||| || | ||||||||||||||| | ||||||||| Sbjct 9298289 GTCTCCCACCTGCAGGCTCGTGACGTGCGCGATCATGTAGGTGAGCAGTGCGTAGCTGGC 9298348 Query 147033 TATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG 147092 ||||||||||| || ||||||||||||||| | |||| ||||||||||||||| || || Sbjct 9298349 GATGTTGAAGGGCACGCCCAGGCCCATGTCCGCGGACCGCTGGTACAGCTGGCAGGACAG 9298408 Query 147093 CTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||||||| |||||||||||||||| ||| |||||| || ||||||||||| Sbjct 9298409 CTCCCCGTTCACCACGTAAAACTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCAT 9298462 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTG--T 147340 |||||||| ||||||||||||||||| || || || |||||||| | ||| ||| Sbjct 9301880 GCCCCAAAATGCCTCCACTGGAAGCCATAGACGGGGCCCAGGTCCC----CTTCCTGGCG 9301935 Query 147341 GCGAGAAGCCCGCCCGC--TTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCAC 147398 || |||| || | || | || || || ||||||||| |||||||||||| ||| Sbjct 9301936 GCTAGAAAACCCCAGGCTGTCCAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTCAC 9301995 Query 147399 TCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAA 147443 |||| ||| || || || || | || || || ||| ||| ||| Sbjct 9301996 TCCCCTGGATGACAGTTCTTTGGCGTTTGTAGATCCCTGGAAGAA 9302040 >seq5 Length=43145420 Score = 150 bits (166), Expect = 2e-31 Identities = 132/167 (79%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| ||||||||| ||| |||||||| Sbjct 42310783 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGCGGAGGTGA 42310724 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| |||| ||||| ||| | ||| || || ||||||||||| |||| Sbjct 42310723 TGCCAAAGGCGGAGAACCAC------------GACCCAGATATCAAGGAGCATGTGAACT 42310676 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| |||||||| |||||||| || | |||||||||| ||| Sbjct 42310675 CCCTGGGAGAAAAGCTGAAGACCCTCAGGCAGCGGCTGCGGCGCTGT 42310629 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 42308584 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 42308525 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 42308524 TAGAAGCCTACATGACAA 42308507 >seq19 Length=30225952 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| || | | || | | ||||| ||||||| |||| |||||||| Sbjct 25925924 GTACTCCCTGGTATTCATCATCGGCGTGGTGGGCAACATCCTGGTGGTCCTGGTCCTCAT 25925983 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||| ||||||| | |||||||| ||||| |||| ||||||||||||| || Sbjct 25925984 GAAGTACAAGCGGCTCAGAAGCATGACCAGCATCTACCTGCTCAACCTGGCCCTCTCAGA 25926043 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 25926044 CCTGCTCTTCCTCTTCACACTTCCCTTCTGGATTGACT 25926081 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || | | ||||| ||||||| |||| |||||||| Sbjct 25762782 GTACTCCCTGGTGTTCATCATCGGCGTGGTGGGCAACATCCTGGTGGTCCTGGTCCTCAT 25762841 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||| | ||| | | |||||||| ||||| |||| ||||||||||||| || Sbjct 25762842 GAAGTACAAGCGACTCCGAAGCATGACCAGCATCTACCTGCTCAACCTGGCCCTCTCAGA 25762901 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 25762902 CCTGCTCTTCCTCTTCACACTTCCCTTCTGGATTGACT 25762939 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| || ||||| | | || | | ||||| ||||||| |||| |||||||| Sbjct 25909106 GTACTCCCTAGTGTTCATCATCGGCGTGGTGGGCAACATCCTGGTGGTCCTGGTCCTCAT 25909165 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||| ||||| | | |||||||| ||||| |||| ||||||||||||| || Sbjct 25909166 GAAGTACAAGCGGCTCCGAAGCATGACCAGCATCTACCTGCTCAACCTGGCCCTCTCAGA 25909225 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 25909226 CCTGCTCTTCCTCTTCACACTTCCCTTCTGGATTGACT 25909263 Score = 105 bits (116), Expect = 8e-18 Identities = 203/298 (68%), Gaps = 26/298 (9%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGT---CCT 8666 ||| || |||||||| | |||| || | || || | ||||| || |||| ||| Sbjct 25703886 GTATTCCCTGGTGTTCATTGTTGGCCTCCTGGGAAA---CATGGTGGTCATAGTGATCCT 25703830 Query 8667 CATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGG 8726 || |||||||| |||||| | |||||||||||||||| |||| ||||| ||||| || Sbjct 25703829 CACAAAGTACAGGAGGCTTGGAATCATGACCAACATCTACCTGCTCAACTTGGCCATTTC 25703770 Query 8727 TGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCAC----TTCCACTCGGGGGGAA 8782 ||||||||| | | ||||| || ||||| |||||| | || || | ||| Sbjct 25703769 TGACCTGCTCTTCCTCTTCACACTTCCCTTCTGGATTTCCTATGTTGCATT------GAA 25703716 Query 8783 CTGGTGGGTG---GGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACG 8839 ||||||| ||| || |||||| ||||| | ||||| | | ||| Sbjct 25703715 TAAGTGGGTGTTTGGA-------CATTTCATGTGCAAGTTCCTGTCTGGCCTCTACTACG 25703663 Query 8840 TGGCACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||| ||||| | || || | || ||||||||| |||| | |||||||| || || Sbjct 25703662 TGGGCTTGTACGGTGAGATCTTCTTCATCATCCTGCTGACCATTGACAGGTACCTGGC 25703605 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||||||||||| |||| | ||| |||||||| |||||||||||| ||||||||| Sbjct 25703173 TGGACATGGCCCTGCAGGTGACAGAGGTGATCGCCCACACCCACTGCTGTGTCAACCCCA 25703114 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| || || ||||| || | ||||| Sbjct 25703113 TCATCTATGCCTTCGTGGGAGAGAGGTTCC 25703084 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||||||||||| |||| | ||| ||||||||| |||||||||||| ||||||||| Sbjct 25926640 TGGACATGGCCCTGCAGGTGACAGAGGTGATCGCCTACACCCACTGCTGTGTCAACCCCA 25926699 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| | || ||||| || | ||||| Sbjct 25926700 TCATCTATGTCTTCGTGGGTGAGAGGTTCC 25926729 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||||||||| | |||| | ||| ||||||||| ||||||||||| ||||||||| Sbjct 25763498 TGGACATGGCCATGCAGGTGACAGAGGTGATCGCCTATACCCACTGCTGTGTCAACCCCA 25763557 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| | ||| |||||| | | ||||| Sbjct 25763558 TCATCTATGTGTTCGTGGGCAAGAGGTTCC 25763587 >seq20 Length=30177268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||| ||| ||||||| || |||| ||| || ||||| | || ||||| | Sbjct 208793 TACTCCTTGGTCTTTCTGTTTGGTCTGCTTGGAAATTCCATGGTGGTGCTGGTCCTATTC 208852 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCC 8721 ||||||||| |||||||| ||||||| | | | |||| ||||||||||| Sbjct 208853 AAGTACAAGCGGCTCAGGTCCATGACCGATGTGTACCTGCTCAACCTGGCC 208903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583467293469600