Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq15 100 3e-16 seq118 89.7 5e-13 seq13 84.2 2e-11 >seq15 Length=31830809 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||||||| | ||| | || ||||||||||||||||||||| | | Sbjct 647104 CCACCACGGAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGAC 647163 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | | ||||| |||||||| || || |||| || ||||| || | |||| Sbjct 647164 AAAGTACATCCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGA 647223 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| ||| |||||| ||| | | || | ||||| | ||| ||| Sbjct 647224 ATGCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACC 647283 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC 35734 || | | |||| || || |||| | ||||| ||||| || ||| Sbjct 647284 TCGAGCATGATGGTCTTCCCCGAGAGGGTTTTTACAAAAATGTGC 647328 >seq118 Length=4884071 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 35544 TCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 || |||| || |||||||| || | || ||| ||| | || ||||||||||| | |||| Sbjct 2270170 TCACCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCTGGCAA 2270229 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 | |||| || ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 2270230 AGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACA- 2270288 Query 35664 TTGCCA-----CCGTGTCGCTCGAT-TCCACCTCCACCGTGATCGTTTTACCCGTCAAAG 35717 || || ||||| || ||| |||||||| | ||||| || || || || | | Sbjct 2270289 TTCTCAGTGGTGGGTGTCACT-GATCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGG 2270347 Query 35718 TTTTCACAAATATCTGCATT 35737 | |||| || ||||||||| Sbjct 2270348 TCTTCATGAAGATCTGCATT 2270367 >seq13 Length=33879094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | | |||||||| |||||||||||| | | Sbjct 14752881 CCACCACGGAGTCTCAACACAAGATGAAGGATGGACTCCTTTTAAATGTTGTAATCAGAC 14752940 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||| |||||||| ||||| |||| || ||||| || | || | Sbjct 14752941 AAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCATTGCTGATCAGGAGCA 14753000 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | | ||| | ||| || Sbjct 14753001 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGAGTCCGAGGGTTCACCC 14753060 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC-AAATATCTGCAT 35736 | | | |||| || || ||| | | ||||| || ||| |||||||| Sbjct 14753061 TTGAGCATGATGGTCTTTCCCAT-AGGGTTTTTACAAAAAATCTGCAT 14753107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450777602462120