Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 seq18 93.3 6e-14 >seq5 Length=43145420 Score = 102 bits (112), Expect = 1e-16 Identities = 190/279 (68%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 214601 AGGGAAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACT 214660 || |||||| || |||| |||||||| ||| |||| ||||| || || || || || || Sbjct 25080353 AGAGAAGGAAATGGCTGCAGAGCTGGAAGCCCTCTATGGTGACATTGATGCTGTGGAGCT 25080294 Query 214661 CTACGCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCT 214720 || | | | || | ||||| || | || || |||||| ||||||| | | | Sbjct 25080293 GTATCCCGGCCTTCTGGTGGAAAAGCCTCGCCCAGACGCCATCTTCGGTGAGACCATGGT 25080234 Query 214721 CGAGTCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGG 214780 ||| ||| || || |||||| ||| |||||| || ||| ||| || || ||| Sbjct 25080233 GGAGATGGGCGCGCCCTTCTCCTTGAAAGGACTCATGGGTAACCCCATATGTTCGCCGCA 25080174 Query 214781 CTACTGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGAC 214840 |||||||| | | || | || | || | |||| | ||| | | | ||| | Sbjct 25080173 TTACTGGAAGCCGAGTACTTTTGGCGGAGACGTGGGTTTTGAGATCATCAACACCGCCTC 25080114 Query 214841 CCTTCAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCC 214879 | |||||||||||||||| | |||||| ||||| ||||| Sbjct 25080113 CATTCAGTCTCTCATCTGCAACAACGTGAAGGGCTGTCC 25080075 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||| | || || | |||||||| || || ||||| | | || | ||| | | Sbjct 25082067 AGATAATTCATGGAGAGATGTACCCTCCCACAGTTAAGGATACTCAAGCAGACATGATCT 25082008 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCG 214115 || ||| | | || || || ||||| || | || | || | ||||| || | Sbjct 25082007 ACCCGCCCCACATCCCTGAGCAGGCGCGTTTTGCTGTAGGCCAGCAGCTCTTTGGCCTGG 25081948 Query 214116 TGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACG 214175 |||| ||| | ||| ||||||||| ||||||||| | ||||| ||||| || ||||||| Sbjct 25081947 TGCCGGGTCTGATGATGTACGCCACCATCTGGCTGCGGGAGCATAACAGAGTGTGCGACG 25081888 Query 214176 TGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||||| || || || || || ||| |||| || | | ||||||| Sbjct 25081887 TGCTGAAGCAGGAACATCCAGAGTGGGACGATGAGCGCTTATTCCAGA 25081840 >seq18 Length=30119850 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| ||||||| || |||| || ||||| | ||||||| |||||||| Sbjct 5687498 TGGGCCAAGAGGTGTTTGGGCTGCTGCCGGGGCTCATGCTCTACGCCACACTCTGGCTGC 5687439 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||||||| | || |||||| ||||||| ||||| || ||| | ||||||| Sbjct 5687438 GTGAGCACAACCGTGTGTGCGACCTGCTGAAGGCGGAGCATCCCACCTGGGAAGACGAAC 5687379 Query 214212 AGCTGTTCCAGATCACTCG 214230 |||| ||||||| ||| || Sbjct 5687378 AGCTCTTCCAGACCACCCG 5687360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723315130443360