Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq86 113 4e-20 seq59 98.7 8e-16 seq16 86.0 5e-12 >seq86 Length=9768497 Score = 113 bits (124), Expect = 4e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| |||||||||||| | ||||||| || ||||| ||||| || || |||||| Sbjct 5479141 CGGTTTAGCCAAGAAGTTCAAATTACAGAAGCCCGCTGTTTCTATGGCTTCCAGATTGCC 5479200 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||| |||||||||||||| || || || || ||||| |||||| Sbjct 5479201 ATGGAAAACATACATTCCGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGAT 5479257 >seq59 Length=15337887 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 43704 TCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCAT 43763 |||| || || || |||| || |||| ||||| ||| || ||||| |||| |||| Sbjct 10657632 TCGTCTTCCCTATGGAATACCACCACATGTGGCACGTGTGTAAGAAAGCCGAGGCCTCAT 10657573 Query 43764 TTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAA 43821 ||||||| || || || || ||| | | |||||| | ||||| ||| || | || Sbjct 10657572 TTTGGACGGCGGAGGAGGTAGATCTTTCCAAAGACATTCAGCAC--TGGGAAGCCCTGAA 10657515 Query 43822 ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG-GA 43880 || | || | | | |||||||| || |||| || |||||||| ||||| || | Sbjct 10657514 GCCCGAGGAGAGATACTTTATATCGCACATTCTGGCTTTCTTTGCTGCCAGCGATGGCAA 10657455 Query 43881 TAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 |||||||||| |||||||| | ||| |||||||||||| | |||||| Sbjct 10657454 TAGTCAATGAGAATTTGGTGGAACCATTTAGCCAAGAAGTTCAAATTACAGAAG 10657401 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 43706 GTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTT 43765 || || || || |||| || |||| ||||| ||| || ||||| |||| |||||| Sbjct 9879783 GTCTTCCCTATGGAATACCACGACACTTGGCATGTGTGTAAGAAAGCCGAGGCCTCATTT 9879724 Query 43766 TGGACAGCAGAAGAAGTTGATTTGACTAAAG--ACTTAGCACATTGGATTGCATTAAAAC 43823 ||||| || || || || ||| | | |||| | | ||||| | ||| | | || | Sbjct 9879723 TGGACCGCGGATGAGGTAGATCTTTCCAAAGCCATTCAGCAC-TGGGA--ACCCTGAAGC 9879667 Query 43824 CACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG-GATA 43882 | | || | | | |||||||| ||| |||| || |||||||| ||||| || ||| Sbjct 9879666 CCGAGGAGAGATACTTTATATCGCACGTTCTGGCTTTCTTTGCTGCCAGCGATGGCAATA 9879607 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 |||||||| |||||||| | ||| |||||||||||| | |||||| Sbjct 9879606 GTCAATGAGAATTTGGTGGAACCATTTAGCCAAGAAGTTCAAATTACAGAAG 9879555 >seq16 Length=31710007 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || || |||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 26953254 AAAATCCCTTCGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 26953195 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 26953194 AACGAGTTTCAGAGTATCAGCG 26953173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442247898195