Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq50 93.3 5e-14 seq29 91.5 2e-13 seq86 82.4 8e-11 >seq50 Length=18100965 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||| ||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 14941379 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTGGTACCAAACTGA 14941438 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| || | | |||||| || || ||| |||||||||||||||||||||||| Sbjct 14941439 CCAATAGGTTGCAAGAGGTTCAGATTATTGCTGCCCACGAAATTCTGAGCCAAATT 14941494 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || |||| |||||||||||| || | ||||| || || Sbjct 14941379 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTGGTACCAAACTGA 14941438 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | || | |||||||||||| || ||| |||||| || || |||||||| |||| Sbjct 14941439 CCAATAGGTTGCAAGAGGTTCAGATTATTGCTGCCCACGAAATTCTGAGCCAAATTGA 14941496 >seq29 Length=23898338 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 17484737 GTGAAAATATAACGAGGGCTCGCGGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 17484796 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | || || |||||||| |||||||||||||||||| Sbjct 17484797 CCAATGGGCTGAAGCAAGTTAATATTATTACTTCCCACGAAGTTCTGAGCCAAATTCACA 17484856 Query 152149 ATCGT 152153 || || Sbjct 17484857 ATAGT 17484861 >seq86 Length=9768497 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| || | ||| || ||||| | ||||||||||| ||||| || ||||| Sbjct 5480119 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCTTG 5480060 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| ||||| | || |||||| |||||||||||||| || |||||||| Sbjct 5480059 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGGCC 5480000 Query 74892 ACAAGGCG 74899 || | ||| Sbjct 5479999 ACCACGCG 5479992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196580672200