Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq118 122 1e-22 seq15 109 6e-19 seq13 102 9e-17 seq54 100 3e-16 seq115 87.8 2e-12 >seq118 Length=4884071 Score = 122 bits (134), Expect = 1e-22 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAG 27463 |||||| ||||| | ||||| || || |||||||| || || || ||||| ||| |||| Sbjct 2270367 AATGCAGATCTTCATGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGATCAG 2270308 Query 27464 GTGATAGC----ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 ||| | | | || ||| | ||||| || || || ||||||||||| || || ||| Sbjct 2270307 -TGACACCCACCACTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCA 2270249 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 ||||||||| | || || ||||| | ||||| || || |||| |||||||| | ||| Sbjct 2270248 GACCAGCAGAGGCTGATCTTTGCCAGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGAC 2270189 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || || |||| |||| ||| || || || ||| |||| || Sbjct 2270188 TACAACATCCAGAAGGTGAACACCCTGCACCTGGTCCTGCGCCT 2270145 >seq15 Length=31830809 Score = 109 bits (120), Expect = 6e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||| || ||||| || || || | || ||||| || | || |||||||| | || Sbjct 647328 GCACATTTTTGTAAAAACCCTCTCGGGGAAGACCATCATGCTCGAGGTTGAACCCTCAGA 647269 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | || |||| | ||||| || || ||||| ||||| || |||||||| || ||||| Sbjct 647268 CACTATAAAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCA 647209 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 | || || || |||||||||||||| || ||| |||| | | || || || | Sbjct 647208 AAGGCTGATCTTCGCTGGTAAGCAACTGGAAAATGGATGTACTTTGTCTGATTACAACAT 647149 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| |||||||||||||| | ||| | || || ||||| Sbjct 647148 TCAAAAGGAGTCCACTCTTCATCTTCTGTTGAGACTCCGTGGTGG 647104 >seq13 Length=33879094 Score = 102 bits (112), Expect = 9e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || || ||||| ||||| |||||| |||| || ||||| | || || Sbjct 14753036 AAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTGCTCCTGATCAGCAATGGCTGAT 14752977 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 ||||||||||||||||| || |||| |||| | | || || || | ||||||| Sbjct 14752976 CTTTGCTGGTAAGCAACTGGAAGATGGATGTACTTTGTCTGATTACAACATTTAAAAGGA 14752917 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || ||| | || || ||||| Sbjct 14752916 GTCCATCCTTCATCTTGTGTTGAGACTCCGTGGTGG 14752881 >seq54 Length=16718083 Score = 100 bits (110), Expect = 3e-16 Identities = 147/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| | ||||| || | | ||||| | ||||||||||| ||| | | Sbjct 7272589 AATGCAGATCTTCATGAAGACCCTCATGAGTAAGACCAACACTCTTGAGGTGGAGCCTAG 7272648 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || | ||||| || || || | |||||||| ||||| || ||||| Sbjct 7272649 TGACACCATTGAGAACATCAAGGCCAAGATCCAAGGCAAGGAGGTCATTCC-CCCGACCA 7272707 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| | ||||| || | |||| | ||||| | ||||| || Sbjct 7272708 GCAGAGGCTGATCTTTGCCAGCAAGCAGCTGGTAGATGGGCACACCCTGTCTGACTACAA 7272767 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCT 27611 |||| || || ||||| || || || Sbjct 7272768 CATCCAGAAAGAGTCCACCCTGCACCT 7272794 >seq115 Length=5499404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || || ||||| || || ||||| | ||||| || || || || ||| | Sbjct 2584698 ATCCAGATTTTTGTAAAAACCCTTACTGAGAAGACCATCACGCTCAAGACTGAACCCTTG 2584639 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | | | |||| | || | || || ||| | ||||||||||||||||| || ||| Sbjct 2584638 GACACAACAGAAAATGTAAAAACCAAGATCCAG-ATAAGGAGGGAATTCCTCCTGATCAG 2584580 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || |||| || |||||||||||||| || | |||| | ||| | | || || || Sbjct 2584579 CAAAGTCTGATCTTTGCTGGTAAGCACCTGAAAGATGGACATACTTTGTCTGATTACAAC 2584520 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||||||| ||||| ||||||| || ||| Sbjct 2584519 ATTCAAAAGGAGTCCACCCTTCATCCTGTGTTG 2584487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570290161109680