Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq111 136 5e-27 seq64 111 2e-19 seq49 109 7e-19 >seq111 Length=6053440 Score = 136 bits (150), Expect = 5e-27 Identities = 574/897 (64%), Gaps = 16/897 (2%) Strand=Plus/Minus Query 13696 TTCCC-ATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTG 13754 ||||| || || || || || ||| | || ||||| || || ||| | || | ||||| Sbjct 2828621 TTCCCGATTGCATATTCCATAGTGGTTCATCACAAAATTGAAATGCTTGACAGGCTCCTA 2828562 Query 13755 AGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGAC 13814 |||||||| || || ||||| |||| ||| |||| |||||| || || | ||| Sbjct 2828561 AGGGCCATTTATATGCCTCAGAATTTCTATTGCATCCATGTGGACAAAAAATCAGAGGAC 2828502 Query 13815 GAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCAC 13874 || | | || | |||||| || ||| || || ||||| Sbjct 2828501 TCCTTTGTAGCTGCAGTGAAAGGCATCGCGTCCTGTTTCAGGAATGTCTTTGTGGCCAGT 2828442 Query 13875 CGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATG 13934 | | || | |||||| |||| || |||||||| |||||||| ||||||| ||||||| Sbjct 2828441 CAGTTGGAGAGCGTGGTCTACGCGTCGTGGAGTCGGGTGCAGGCTGACCTCAACTGCATG 2828382 Query 13935 TCGGACCTGGAC-GCCTCCCCCGTCAAG--TGGAGGTACCTGCTCAACCTGTGCGGGATG 13991 |||||| || | | || || |||| |||| || ||||||| || |||||| Sbjct 2828381 AAGGACCTCTACAGAATGA---GTGCAGACTGGAAGTACTTGATCAACCTTTGTGGGATG 2828325 Query 13992 GACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAG 14051 || || || | || ||||||||||| || || || ||| ||| || | || | Sbjct 2828324 GATTTTCCTATTAAAACCAACCTGGAAATGGTCAGGAAGCTCAAGTCCTTCATGGGTGAA 2828265 Query 14052 AACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA-GCTGCACCGCATCAGGAAGAGGCA 14110 ||| |||||| | ||| ||||| ||| || || | | | |||| ||||| Sbjct 2828264 AACAACCTGGAAACAGAGAAGATGCCATCCCATAAAGCAGAAAGGT----GGAAAAGGCA 2828209 Query 14111 CGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCT 14170 | | || || || | || |||| |||| ||| | | ||| || || Sbjct 2828208 TTACGCAGTCATCGATGGAAAGCTGACAGACACAGGCACCGCCAAAACGCAGCCTCCACT 2828149 Query 14171 CAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTT 14230 || | || | || | || | || || |||| ||||| | |||||| |||| || Sbjct 2828148 CAAAACGCCTCTTTTCTCAGGGAGTGCCTATTTTGTGGTCAGCAGGGAGTATGTGGGCTA 2828089 Query 14231 CGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCC 14290 ||| || | | || | | ||||| | ||| ||||||| |||||||| Sbjct 2828088 CGTGCTGGAAAATGAAGACATCCAAAAGTTCATGGAGTGGGCGCAGGACACATACAGCCC 2828029 Query 14291 CGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCC-CCG 14349 || ||| | || |||||||| | ||||| || | ||| |||| || || ||| Sbjct 2828028 TGATGAGTATCTCTGGGCCACGATCCAGAGG--GTCCCGGAGGCCCCAGGTTCTCTACCG 2827971 Query 14350 TTCA-CGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCAC 14408 | | | |||||||||| || |||||| ||| | |||||| ||||||||||| Sbjct 2827970 CTGAGCCACAAGTACGACCTGTCTGACATGCAGGCTGTTGCCAGGTTTGTCAAGTGGCAG 2827911 Query 14409 TACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTC 14468 |||| ||| || || | || || || || | || || || |||||||| ||||||| Sbjct 2827910 TACTTCGAAGGTGACGTTAACAAGGGCGCTCCCTATCCACCCTGCGACGGTGTCCACGTG 2827851 Query 14469 CACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGAGCGTCCCGCACCTG 14528 | | | | ||||| || || |||| ||| ||| ||| || | || | ||| | Sbjct 2827850 CGCAGCGTGTGCATTTTTGGAGCCGGTGACTTGACCTGGATGCTGCGCAAACACCACTTT 2827791 Query 14529 TTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAG 14585 || ||||| ||||| ||| || |||| || ||| | | |||||||| ||| Sbjct 2827790 TTTGCCAATAAGTTTGACATGGATGTGGACCTCTTTGCCATCCAGTGTCTGGATGAG 2827734 >seq64 Length=13971780 Score = 111 bits (122), Expect = 2e-19 Identities = 246/363 (68%), Gaps = 16/363 (4%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 || |||| || || || | |||||| || ||| |||| | | |||| | ||| Sbjct 3739783 GAGGAGGCCGCCTTCCCGCTGGCCTACGTCATGGTGGTCCATAAGGACTTCGACACCTTC 3739724 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 ||| | ||| | ||||| ||||| || || ||| | |||||||| |||| ||| || Sbjct 3739723 GAGAGGCTCTTCCGGGCCGTCTACATGCCCCACAACGTGTACTGCGTGCACGCCGACGCC 3739664 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG-TGCTTCCCTAACGT 13861 ||| | | | |||||||| | | ||| |||| || || |||||||| |||| Sbjct 3739663 AAGGCGGCCCCCGAGTTCAGGAGCGCCGTG-CGGCTGCTGCTCGGCTGCTTCCCCAACGC 3739605 Query 13862 GGCCCTGGCCCACCGGCTGCAC-GA---CGTGGTGTACG---GCTCCTGGAGTCGCGTGC 13914 ||||||| ||| ||| || |||||| |||| | | || || | | | Sbjct 3739604 CTTCCTGGCCTCCCG----CACCGAGCCCGTGGTCTACGCGGGGTTCTCCAGGCTC---C 3739552 Query 13915 AGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGC 13974 |||||||||| ||||||| |||||||| |||||| ||| |||| |||| | Sbjct 3739551 AGGCCGACCTGCACTGCATGAGGGACCTGGTGGCCTCCGAGGTCCCCTGGAAGTACGTCA 3739492 Query 13975 TCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGA 14034 ||||| |||||| ||| ||||| |||||||||||| ||||||||| | | |||| Sbjct 3739491 TCAACACCTGCGGGCAGGATTTCCCACTCAAGACCAACAGGGAGATCGTCCAGTACCTGA 3739432 Query 14035 AGG 14037 ||| Sbjct 3739431 AGG 3739429 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 13914 CAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTG 13973 ||||||||||| |||| || |||||||| |||||| ||| |||| |||| | Sbjct 3763522 CAGGCCGACCTGCACTGCTTGAGGGACCTGGTGGCCTCCGAGGTCCCCTGGAAGTACGTC 3763463 Query 13974 CTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTG 14033 ||||| |||||| ||| |||||||||||||||||| ||||||||| | | ||| Sbjct 3763462 ATCAACACCTGCGGGCAGGATTTCCCGCTCAAGACCAACAGGGAGATCGTCCAGTACCTG 3763403 Query 14034 AAGG 14037 |||| Sbjct 3763402 AAGG 3763399 >seq49 Length=17942781 Score = 109 bits (120), Expect = 7e-19 Identities = 191/274 (70%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 ||||| ||||| |||||||||||||| ||||||||| ||||| | | | ||| |||| Sbjct 15205262 GACACCTACAGTCCCGACGAGCACCTCTGGGCCACCCTGCAGCGTGCCTCCTGGATGCCC 15205203 Query 14337 GGGGGGATCCCCGTT-CACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTT 14395 || || || || ||| ||||||||||| |||||||||| ||| | |||| | Sbjct 15205202 GGCTCT-TCTCCTTTGCACCCCAAGTACGACATCTCGGACATGACCTCCATCGCCAGGCT 15205144 Query 14396 CGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGA 14455 ||||||||||| | ||||||| || ||| ||||| | ||| | |||| Sbjct 15205143 GGTCAAGTGGCAGGAACACGAGGGAGACGTCAGCCGGGGGGCTCCTTACGGACGTTGCTC 15205084 Query 14456 CGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG---CTGAA 14512 ||| |||||| | ||||||||| | | ||| | || ||| || | ||| ||| | Sbjct 15205083 CGGAATCCACCAGCGCGCCATCTGTGTTTATGGGGCTGGGGACCTGCACTGGATGCTGCA 15205024 Query 14513 GAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || | | || ||| | ||||||||||| ||| Sbjct 15205023 GAAC---CATCATCTGCTGGCCAACAAGTTTGAC 15204993 Score = 107 bits (118), Expect = 3e-18 Identities = 247/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 13674 CTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATC 13733 |||||| |||||| | || || || ||||| ||||| || ||| | ||| | |||||| Sbjct 15205859 CTGAGCAAAGAAGAGTTAGACTTCCCTATCGCATACTCCATGGTGGTTCACGAGAAGATC 15205800 Query 13734 GAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCAC 13793 || | || ||| | || ||| | || | || || || |||||| | ||||||||||| Sbjct 15205799 GAAAACTTTGAGAGGCTGCTGCGAGCTGTGTATGCACCTCAGAACATATACTGCGTCCAT 15205740 Query 13794 GTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTC 13853 |||||| ||||| || |||| || ||| ||| || || ||||||| Sbjct 15205739 GTGGACGAGAAGTCTCCAGAAACATTCAAAGAGGCGGTCAGGGCGATTGCTTCGTGCTTC 15205680 Query 13854 CCTAACGTGGCCCTGGCCCACCGGCT-GCACGACGTGGTGTACGGCTCCTGGAGTCGCGT 13912 || || || | | ||| | ||| | ||| ||||| || | |||||| | || Sbjct 15205679 CCAAATGTCTTCATAGCCAGCAAGCTAGTTCGA-GTGGTTTATGCTTCCTGGTCCAGGGT 15205621 Query 13913 GCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC-GC-CTCCCCCGTCAAGTGGAGGTAC 13970 |||||||||||| | |||||| |||||| || || | | || |||| ||| Sbjct 15205620 GCAGGCCGACCTGAATTGCATGGAGGACCT--ACTGCAGAGCTCAGTGCCATGGAAATAC 15205563 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 ||||| ||| ||||||| ||||| || | |||||||| ||||| || ||||| Sbjct 15205562 CTGCTGAACACCTGCGGGACAGACTTTCCTATAAAGACCAATGCCGAGATGGTCCGGGCC 15205503 Query 14031 CTGAAG 14036 || ||| Sbjct 15205502 CTTAAG 15205497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658715822992640