Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 167 2e-36 >seq1 Length=63520090 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | Sbjct 9298310 GACGTGCGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGCACGCCCAG 9298369 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| | || || || || |||||||||||||||||||| ||| | ||||| || Sbjct 9298370 GCCCATGTCCGCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACCACGTAAAA 9298429 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||||| |||||| || || ||||||||||| |||||||| Sbjct 9298430 CTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGGGGGAGATC 9298474 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||| ||||||||||| || || |||||| |||||||||| || ||||| | ||| Sbjct 9298474 GATCTCCCCCTGATGGCGCTGCCTCCCTGCCACGCCCTCTGCCAGTTTTACGTGGTGAAC 9298415 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||||| || || || || | |||||||| | || ||||| ||| Sbjct 9298414 GGGGAGCTGTCCTGCCAGCTGTACCAGCGGTCCGCGGACATGGGCCTGGGCGTGCCCTTC 9298355 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || ||||| |||||||| ||||||||||| || ||| Sbjct 9298354 AACATCGCCAGCTACGCACTGCTCACCTACATGATCGCGCACGTC 9298310 Score = 122 bits (134), Expect = 8e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || ||||| ||||||| ||| || |||| Sbjct 9301874 TAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATAGACGGGGCCCAGGTCCCCTTCCTGG 9301933 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | |||||| | ||||||| ||||| || ||||||| ||||||||||||||| Sbjct 9301934 CGGCTAGAAAACCCCAGGCTGTCCAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTC 9301993 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 || |||| ||| || || || |||| ||| || Sbjct 9301994 ACTCCCCTGGATGACAGTTCTTTGGCGTTTGT 9302025 Score = 122 bits (134), Expect = 8e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 || ||| |||| || || || ||| |||| ||||||||||||||||| ||||||| || Sbjct 9302025 ACAAACGCCAAAGAACTGTCATCCAGGGGAGTGAAGATCTGGGACGCCAACGGGTCCCGG 9301966 Query 34355 GACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTAC 34414 ||||| ||||||| | |||||| | || |||| || ||| ||||||| ||||| Sbjct 9301965 GACTTCCTGGACAGCCTGGGGTTTTCTAGCCGCCAGGAAGGGGACCTGGGCCCCGTCTAT 9301906 Query 34415 GGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||||||||| || |||||||| || || Sbjct 9301905 GGCTTCCAGTGGAGGCATTTTGGGGCTGACTA 9301874 Score = 98.7 bits (108), Expect = 9e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 ||||||||||| || ||||| | ||||||||||||||| ||||| || | ||||||| Sbjct 9299886 TTCGGGTTCCAGGCACACATGATGATCCTTCTGTCATCGGGGTTGGTTTTGATGGTGTCG 9299945 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885 ||||| | |||||||||||| |||| || ||||| || || || Sbjct 9299946 ATCACTTTCTGCAGCTGGTCAACTCCTTGACCCGAGTAATCTGC 9299989 Score = 98.7 bits (108), Expect = 9e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || || || ||||| || |||| |||||||||||| | |||||||||||| | || Sbjct 9299989 GCAGATTACTCGGGTCAAGGAGTTGACCAGCTGCAGAAAGTGATCGACACCATCAAAACC 9299930 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||||| ||||||||||||||| | ||||| || ||||||||||| Sbjct 9299929 AACCCCGATGACAGAAGGATCATCATGTGTGCCTGGAACCCGAA 9299886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448246492288080