Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq26 167 2e-36 seq1 122 7e-23 >seq26 Length=25788011 Score = 167 bits (184), Expect = 2e-36 Identities = 201/272 (74%), Gaps = 1/272 (0%) Strand=Plus/Plus Query 1255 TTAAG-TGTTTTTTAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAA 1313 ||||| |||| | | |||| | || ||| || ||||| |||||||| ||| || Sbjct 12686206 TTAAGATGTTCTCTGCAAACTTCCCAGCAAGCCGTAATTGTGACATGGCAGAAAAAGAAG 12686265 Query 1314 GCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCA 1373 || ||||||||||||||||| ||| | ||||| ||||||| |||| || ||||| Sbjct 12686266 GCTGTAAGCCCAGAAAACATGGTCACCTACAGTAAGACCCACGGGATTGTGGTCCAGCCC 12686325 Query 1374 GCATACAAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTC 1433 || || | || | ||||||| || || || ||||| || || || | || || ||| Sbjct 12686326 GCCTATAGGGACAGGGTGAACATCACCGAACTAGGACTTCAGAAGTCAGCCATCACTTTC 12686385 Query 1434 TGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCT 1493 ||||| ||||| |||| ||||||||||| |||| |||| | || || |||||||| ||| Sbjct 12686386 TGGAATGCAACACTGGAAGATGAAGGGTGTTACATGTGTCTCTTCAATACTTTTGGCTCT 12686445 Query 1494 GGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 || ||||| ||||||| || || || ||||| Sbjct 12686446 GGAAAGATCTCAGGAACAGCCTGCCTTACCCT 12686477 >seq1 Length=63520090 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 47083803 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 47083744 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 47083743 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 47083684 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||||| Sbjct 47083683 ATCGCCCTCTGGATGACAGA 47083664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 118545 GTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACC 118604 ||| || |||||||| || | || ||||||||| | || || || || ||||| || Sbjct 9298313 GTGCGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCC 9298372 Query 118605 CATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 |||||| || || | |||||||| ||||| || ||||||||||| | || |||||||| Sbjct 9298373 CATGTCCGCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACCACGTAAAACTG 9298432 Query 118665 ACTTATGATGTGACATGGAGGCAGAACCAT 118694 | | | ||| || |||||||| |||| Sbjct 9298433 GCAGAGGGCGTGGCAGGGAGGCAGCGCCAT 9298462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414462458973196