Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq15 172 1e-37 seq13 152 1e-31 seq118 125 2e-23 seq54 118 2e-21 seq66 109 1e-18 seq113 107 4e-18 seq51 98.7 2e-15 seq12 89.7 1e-12 seq123 84.2 5e-11 seq7 84.2 5e-11 seq2 84.2 5e-11 >seq15 Length=31830809 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | | ||| |||||||||||||| ||||| ||||| ||||| | | || Sbjct 647109 ACGGAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGT 647168 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||||| ||||| || |||||||| || | ||| || |||||||||| || Sbjct 647169 ACATCCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCC 647228 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || |||| || ||||| ||| |||||||||||| Sbjct 647229 TTCCTTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAG 647288 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||| ||||| |||| ||| || |||||||| Sbjct 647289 CATGATGGTCTTCCCCGAGAGGGTTTTTACAAA 647321 >seq13 Length=33879094 Score = 152 bits (168), Expect = 1e-31 Identities = 171/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | ||||| ||||| ||||||| |||| ||||| ||||| | | || Sbjct 14752886 ACGGAGTCTCAACACAAGATGAAGGATGGACTCCTTTTAAATGTTGTAATCAGACAAAGT 14752945 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| ||||| || || ||||| || | ||| || ||||||| || ||| Sbjct 14752946 ACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCATTGCTGATCAGGAGCAATTCC 14753005 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| || | ||| ||| |||| ||| ||| Sbjct 14753006 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGAGTCCGAGGGTTCACCCTTGAG 14753065 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC-AAACACCTGCATTTT 211117 |||| ||||||||| | || || ||||| ||| | |||||| || Sbjct 14753066 CATGATGGTCTTTCCCAT-AGGGTTTTTACAAAAAATCTGCATGTT 14753110 >seq118 Length=4884071 Score = 125 bits (138), Expect = 2e-23 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||| | | || |||||||| || || | ||||| | |||||| Sbjct 2270151 AGGACCAGGTGCAGGGTGTTCACCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 2270210 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||| || ||||| || | || ||||| || || | || |||||||| Sbjct 2270211 TCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 2270270 Query 211023 TGGATCTTTTGTTTCACGTTTTC----GATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||| || || || || | ||||||| | | || |||||||| ||||| Sbjct 2270271 TGGATCTTGGCCTTGACATTCTCAGTGGTGGGTGTCACTGATCTCCACCTCGAGGGTGAT 2270330 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| ||||| | || | ||||||| Sbjct 2270331 GGTCTTGCCAGTGAGGGTCTTCATGAAGATCTGCATT 2270367 >seq54 Length=16718083 Score = 118 bits (130), Expect = 2e-21 Identities = 151/207 (73%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| || ||||||||||| |||||||| || || | ||||| |||||| ||||| Sbjct 7272794 AGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATCTACCAGC 7272735 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||||| || ||||| || | || ||||| || |||| | |||||| | |||||| Sbjct 7272734 TGCTTGCTGGCAAAGATCAGCCTCTGCTGGTC-GGGGGAATGACCTCCTTGCCTTGGATC 7272676 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || | ||| || ||||||||| || ||||| |||||| | ||||| | | Sbjct 7272675 TTGGCCTTGATGTTCTCAATGGTGTCACTAGGCTCCACCTCAAGAGTGTTGGTCTTACTC 7272616 Query 211089 GTGAGAGTCTTTACAAACACCTGCATT 211115 |||| ||||| | || | ||||||| Sbjct 7272615 ATGAGGGTCTTCATGAAGATCTGCATT 7272589 >seq66 Length=13365902 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||||||||| ||||||||||| || | ||| || | |||||| Sbjct 1687879 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGCGGCCATCT 1687820 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||||||| |||||||| || | || |||||||| || | ||||| Sbjct 1687819 TCCAGCTGCTTGCCCGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTC 1687767 >seq113 Length=5825819 Score = 107 bits (118), Expect = 4e-18 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 210929 TTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAG 210988 ||| ||||| ||| | | | || | |||||||||||| ||||| || || ||||| || Sbjct 3733309 TTGAATGTTGTAACCGGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAG 3733368 Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 | ||| | || ||||||| ||||||||| ||||||||||| || | ||| || Sbjct 3733369 CCTTTGCAGATCGGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTATGTTCTC--C 3733426 Query 211049 GGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACAC 211108 ||||| || |||||||||||| ||||| ||||| || | ||| || |||| || | Sbjct 3733427 CGTGTCCGACAGTTCAACCTCGAGTGTGATGGTCTTCCCTGGGAGGGTTATTACGAAAAT 3733486 Query 211109 CTGCAT 211114 ||| || Sbjct 3733487 CTGTAT 3733492 >seq51 Length=17756649 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/162 (74%), Gaps = 5/162 (3%) Strand=Plus/Minus Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||||| ||||| || || ||||| || | ||| || | |||||||| ||| Sbjct 16615598 TCCATCTTCCACTTGCTTACCAGCAAAGATCAG-CTTTGCTGATTAGGAGGAA----TTC 16615544 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||||||||| ||| || ||||| || || || || |||||||||||| | Sbjct 16615543 CTTATCCTGGATCTTGGCTTTTACATTTTCTATCGTATCCTAGGGTTCAACCTCGAGCAT 16615484 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| | | || || |||||||| | ||| || || Sbjct 16615483 GATGGTCTTCCTCACAAGGGTTTTTACAAAAATCTGTATCTT 16615442 >seq12 Length=33761702 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/188 (72%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979 |||||||| |||||||||| || | ||||| |||||||| |||||||||| || Sbjct 23446830 GGACTCTT---GGATGTTATAGTCAGACAGGGTATGCCCATCTTCTAGCTGCTTGCTGGC 23446774 Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCAC 211039 |||||||| | | ||||| || | | ||||||||||| |||||||| || || Sbjct 23446773 AAAGATAAGCCCCCGCTGGTC-GGGGAGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC 23446715 Query 211040 GTTTTCGATGGTGT--CAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || |||||| | | || || |||| || ||||| ||||| || | ||| ||| Sbjct 23446714 ATTCTCAGTGGTGTTGCTGGGC--TCTGCCTCAAGGGTGATGGTCTTACCAGAGAGGGTC 23446657 Query 211098 TTTACAAA 211105 || || || Sbjct 23446656 TTCACGAA 23446649 >seq123 Length=4477440 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||||||||| || ||| || || |||||||||||| | || |||||| Sbjct 3008462 CCCTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCG 3008521 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| || || | |||||| Sbjct 3008522 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3008565 >seq7 Length=40563840 Score = 84.2 bits (92), Expect = 5e-11 Identities = 125/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| |||| || | |||| | | | ||||||||||||||||| || || || | Sbjct 39011976 TTTTGAGTGTTGTA--CGGCAAAG-TACATCCATCTTCCAGCTGCTCACCAGCACAGCTC 39011920 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | | || |||||||||| | ||||||||| ||||||||| | || || ||||| Sbjct 39011919 AACCTGTGCTGGTCAGGAGAGATTCCTTCCTTCTCCTGGATCATGCCCTTTACATTTTCT 39011860 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTA 211101 || |||| ||| | |||||| || |||| ||||| || || || || |||| Sbjct 39011859 ATAGTGTTTGAGGGCTTAACCTCAAGCATGATGGTCTTCCCTGTAAGGGTTTTTA 39011805 >seq2 Length=58787292 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||| | || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 1920383 AGGACCAGGGGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCACCCATCT 1920442 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||| | | || || |||| || | || || ||||| || | || |||||||| Sbjct 1920443 TCCAGCT-CCTCCCGGCAAAGACCAGCCTCTGCTGCTCAGGGGGTATGCCCTCCTTGTCT 1920501 Query 211023 TGGATCTT 211030 |||||||| Sbjct 1920502 TGGATCTT 1920509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159109836208235