Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 1e-13 seq13 84.2 1e-11 seq115 82.4 5e-11 >seq15 Length=31830809 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| ||||| || ||||||||| |||| || || |||| ||||| ||||| || | || Sbjct 647328 GCACATTTTTGTAAAAACCCTCTCGGGGAAGACCATCATGCTCGAGGTTGAACCCTCAGA 647269 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 |||| | ||| |||| || || || || ||||| | || || ||||| || Sbjct 647268 CACTATAAAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCA 647209 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 | | || || || || || ||||||||| | | | | ||||| ||||||||||| Sbjct 647208 AAGGCTGATCTTCGCTGGTAAGCAACTGGAAAATGGATGTACTTTGTCTGATTACAACAT 647149 Query 23793 ACAAAAAGAGTCCAC 23807 ||||| |||||||| Sbjct 647148 TCAAAAGGAGTCCAC 647134 >seq13 Length=33879094 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTC-GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || ||||||||||| || |||||||| | |||||| || |||| ||| | | ||| | Sbjct 14753110 AACATGCAGATTTTTTGTAAAAACCCT-ATGGGAAAGACCATCATGCTCAAGGGTGAACC 14753052 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| || | |||| |||| || || || || ||||| | | || || Sbjct 14753051 CTCGGACTCTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTGCTCCTGA 14752992 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | | || ||||| || || ||||||||||| | | | ||||| ||||| Sbjct 14752991 TCAGCAATGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGATGTACTTTGTCTGATTA 14752932 Query 23787 CAACATACAAAAAGAGTCCA 23806 |||||| |||| ||||||| Sbjct 14752931 CAACATTTAAAAGGAGTCCA 14752912 >seq115 Length=5499404 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || || |||||||| || |||||||| || | || || ||||| ||| | ||| || Sbjct 2584701 AAGATCCAGATTTTTGTAAAAACCCTTACTGAGAAGACCATCACGCTCAAGACTGAACCC 2584642 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||||| |||| | | ||||| || | | | || || || || | || || || Sbjct 2584641 TTGGACACAACAGAAAATGTAAAAACCAAGA--TCCAGATAAGGAGGGAATTCCTCCTGA 2584584 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || || | || ||||| || || || ||| |||| | || ||||| ||||| Sbjct 2584583 TCAGCAAAGTCTGATCTTTGCTGGTAAGCACCTGAAAGATGGACATACTTTGTCTGATTA 2584524 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| |||||||| Sbjct 2584523 CAACATTCAAAAGGAGTCCAC 2584503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997904762212