Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq15 147 5e-30 seq2839 138 3e-27 seq1 102 2e-16 seq118 100 7e-16 >seq15 Length=31830809 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| | ||| || |||||||| || ||||| | |||||||| | |||||| Sbjct 647109 ACGGAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGT 647168 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||| ||| || ||||| ||||||||||| || | ||| || || || ||||| || Sbjct 647169 ACATCCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCC 647228 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| || || |||||||||| ||| || || | Sbjct 647229 TTCCTTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAG 647288 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTA 225700 | |||| ||||| |||| | ||||||| Sbjct 647289 CATGATGGTCTTCCCCGAGAGGGTTTTTA 647317 >seq2839 Length=16580 Score = 138 bits (152), Expect = 3e-27 Identities = 135/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||||||||| ||| | || || ||||| ||||| || || |||||| | || || Sbjct 5483 CCAAATTTACAACGTAATTGTCACCGCCCATGCATTTGTCATAATCTTCTTTATAGTAAT 5542 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| |||| || || |||||||||||||| || || || ||||| || || |||||||| Sbjct 5543 GCCTATTATAATTGGAGGTTTCGGAAATTGGTTAGTCCCCTTAATAATCGGAGCTCCTGA 5602 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||| || || ||| | | || |||||||| || ||| | ||||| ||||| || Sbjct 5603 TATAGCCTTCCCACGAATAAATAATATAAGCTTCTGACTTCTACCTCCTTCATT 5656 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||| || || |||||||| |||| ||||||||||||||||| || || || | Sbjct 6060 ATACTTCAGGGTGTCCGAAAAATCAAAATAGGTGTTGATAAAGGATAGGGTCTCCGCCCC 6001 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||| || || || ||||||||| |||| || ||||| Sbjct 6000 CTGCTGGGTCGAAGAAAGTAGTATTAAGGTTTCGGTCTGTTAA 5958 >seq1 Length=63520090 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || ||| ||| ||||| |||||||||||||||| Sbjct 31655049 CACTTCAGTACCTGGCTCCTTACTCTGGCTGTTCTATGGGAGAGTATTTTAGAGATAATG 31654990 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| |||||||| ||||| ||| ||||| |||| Sbjct 31654989 GAAAACATGCTTTGATCATCTATGATGACTTATCCAAACAGGTCAA 31654944 >seq118 Length=4884071 Score = 100 bits (110), Expect = 7e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||| | || |||| ||||| || | || || | |||||| Sbjct 2270150 CAGGACCAGGTGCAGGGTGTTCACCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 2270209 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| | || ||||| || | || ||||| || || || || |||||||| Sbjct 2270210 TTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 2270269 Query 225621 TTGGATCTTTTGCTTCACA-GCT---TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||||||| ||| ||| || | | |||||| | | ||||| || | |||| Sbjct 2270270 TTGGATCTTGGCCTTGACATTCTCAGTGGTGGGTGTCACTGATCTCCACCTCGAGGGTGA 2270329 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | |||||||| || | || || ||||| | |||||| Sbjct 2270330 TGGTCTTGCCAGTGAGGGTCTTCATGAAGATCTGCATT 2270367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192487822050266