Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 >seq1 Length=63520090 Score = 154 bits (170), Expect = 1e-32 Identities = 129/158 (82%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||||||| || |||||||| ||||| || | ||||||||||||||| |||||||| || Sbjct 9298308 GTGACGTGCGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGCACGCCC 9298367 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || ||||||||| | |||| |||||| |||||||| || ||||| |||| ||||||| Sbjct 9298368 AGGCCCATGTCCGCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACCACGTAA 9298427 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| || | ||| ||||| ||||| || ||||| || Sbjct 9298428 AACTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAG 9298465 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||||||| || || | | | || ||| Sbjct 9301886 AAATGCCTCCACTGGAAGCCATAGACGGGGCCCAGGTCCCCTTCCTGGCGG--CTAGAAA 9301943 Query 30077 CCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||| |||||| ||||| | ||| |||||||||||||||||||| || ||| | Sbjct 9301944 ACCCCAGGCTGTCCAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTCACTCCCCTGG 9302003 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||||| |||||| || || Sbjct 9302004 ATGACAGTTCTTTGGCGTTTGTAGATCC 9302031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406149146626354