Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq86 98.7 8e-16 seq16 98.7 8e-16 seq59 89.7 4e-13 >seq86 Length=9768497 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| |||||||| ||||| || | || ||||| | || | || || Sbjct 5480119 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCTTG 5480060 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || | ||||| || ||||||||||| |||||||| || |||||||| || Sbjct 5480059 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGGCC 5480000 Query 4692 AC 4693 || Sbjct 5479999 AC 5479998 >seq16 Length=31710007 Score = 98.7 bits (108), Expect = 8e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| || || || || ||||||||||||||||| || || | Sbjct 26965368 AAAATCTT---ACCAAGTTTTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCTAAGA 26965424 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| ||||| || || || || |||||||| |||| ||| || | Sbjct 26965425 TGTGAGAAATAAAATACTTCTCGTCTGGTTTCAGCTTGTTCCAGTGAGGCAGATCCTTTG 26965484 Query 5041 TTAAATCAAC 5050 || ||||| Sbjct 26965485 ATAGGTCAAC 26965494 >seq59 Length=15337887 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA-CCG 4955 ||||||| | ||||||||| | | |||| ||| || || || || || ||||| || Sbjct 10657401 CTTCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCA 10657460 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 || ||||| ||||| || |||| || || ||||||||||| || || ||||| || Sbjct 10657461 TCGCTGGCAGCAAAGAAAGCCAGAATGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGG 10657520 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 || |||||| | | ||||| | | ||| || || || | |||||||| || || Sbjct 10657521 GCTTCCCAGTGCTGAATGTCTTTGGAAAGATCTACCTCCTCCGCCGTCCAAAATGAGGCC 10657580 Query 5076 TCCGCTTTTTT 5086 || ||||| || Sbjct 10657581 TCGGCTTTCTT 10657591 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA-CCG 4955 ||||||| | ||||||||| | | |||| ||| || || || || || ||||| || Sbjct 9879555 CTTCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCA 9879614 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 || ||||| ||||| || |||| ||| || ||||||||||| || || ||||| || Sbjct 9879615 TCGCTGGCAGCAAAGAAAGCCAGAACGTGCGATATAAAGTATCTCTCCTCGGGCTTCAG- 9879673 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 || |||||| | | |||| | | ||| || || || | |||||||| || || Sbjct 9879674 GGTTCCCAGTGCTGAATGGCTTTGGAAAGATCTACCTCATCCGCGGTCCAAAATGAGGCC 9879733 Query 5076 TCCGCTTTTTTGTACATAGACCAA 5099 || ||||| || ||| | |||| Sbjct 9879734 TCGGCTTTCTTACACACATGCCAA 9879757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427034823950387