Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 >seq1 Length=63520090 Score = 143 bits (158), Expect = 2e-29 Identities = 127/159 (80%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273 |||||||| || |||||||| ||||| || | ||||||||||||||| ||||| || || Sbjct 9298308 GTGACGTGCGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGCACGCCC 9298367 Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333 || ||||||||| | |||| |||||| ||||| || || ||||| || | |||||| Sbjct 9298368 AGGCCCATGTCCGCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACCACGTAA 9298427 Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 9298428 AACTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGG 9298466 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || |||| || || || ||||||||||| ||||| || || || || ||||||| Sbjct 9301863 TCATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATAGACGGGGCCCAGGT 9301922 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGC 27605 | || || | | | || ||| ||| |||||| ||||| | ||| |||||||| Sbjct 9301923 CCCCTTCCTGGCGG--CTAGAAAACCCCAGGCTGTCCAGGAAGTCCCGGGACCCGTTGGC 9301980 Query 27606 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||||||| || ||| | || || ||||||| |||||| || || Sbjct 9301981 GTCCCAGATCTTCACTCCCCTGGATGACAGTTCTTTGGCGTTTGTAGATCC 9302031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369494414935409