Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq86 116 5e-21 seq13 109 8e-19 seq59 105 9e-18 >seq86 Length=9768497 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| ||||| | |||||| ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 5480119 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCTTG 5480060 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || |||| || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 5480059 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGGC 5480001 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| |||||| || || | ||||| ||||||||||| || || | Sbjct 5479267 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAATGTATGT 5479208 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || ||||| || || || ||||| | |||||||| || || || || Sbjct 5479207 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTC 5479153 Score = 86.0 bits (94), Expect = 9e-12 Identities = 108/146 (74%), Gaps = 8/146 (5%) Strand=Plus/Minus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG-----ACATAACT 47843 |||| ||||||||||| |||| |||| |||| ||| || | || | |||||||| Sbjct 5481115 GTTCATTTAAAAGTCAGCATCCAAAGTAAAAGAATTCTC--CGTGGGGCTGGACATAACT 5481058 Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903 ||||| | ||||| || || || | ||||| || || || || || ||||||| || Sbjct 5481057 CCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAA 5480998 Query 47904 ATATTTTCCATAAAATCAAATGGATT 47929 ||||| ||||| || || |||||||| Sbjct 5480997 ATATTCTCCATGAAGTCGAATGGATT 5480972 >seq13 Length=33879094 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || || ||||| || ||||| | || Sbjct 19896916 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTGTAAGGTTCAATGGAC 19896857 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || ||||| || |||||||| |||||||| ||||| || || | | | ||| Sbjct 19896856 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGAAGACTG 19896797 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 19896796 TTTCTTATACCAT 19896784 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 19861960 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGGTTG 19861901 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | |||||||| || ||||| || || | || | ||||||| Sbjct 19861900 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 19861841 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || || |||||| || Sbjct 19861840 ATATGTTGCGGCCTTTCAGCC 19861820 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || ||||| | || | || Sbjct 19876770 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 19876711 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | |||||||||||| | || || ||||||| || Sbjct 19876710 TCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGAAACTCAAAGATGTCTAAATGCCAAGGC 19876651 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 19876650 TCCAGGTAAATAGC 19876637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 ||||||||| | ||| ||||| || |||||| || || || || || |||||||| | Sbjct 19878351 CTACCTCATCTTTGCTGGTATATTCTACTATCTCTGTGCACAGGTTGCTGCATTTGATTG 19878292 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823 | ||||| || |||||||||||||| |||||| || || || || || || |||| | Sbjct 19878291 TTCCCAGGTTCTGTTGGTTGCTCTTCCGATTGCAGGAATCTTTGTAGAGCATGTACGGGG 19878232 Query 77824 TCCCGGTTTCAATCTGTGATTCGATAAT 77851 | || || || |||| || || || || Sbjct 19878231 TACCCGTCTCTGTCTGGGACTCAATGAT 19878204 >seq59 Length=15337887 Score = 105 bits (116), Expect = 9e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT-CCA 48545 ||||||| || || || || | |||| |||| ||||||||||||| |||||| ||| Sbjct 9879555 CTTCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCA 9879614 Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT 48605 || || |||||||| || || | || || ||||| ||| | || | || |||| Sbjct 9879615 TCGCTGGCAGCAAAGAAAGCCAGAACGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGG 9879674 Query 48606 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCC 48665 | | ||||| | || |||| || | |||||| || || || ||||||||||| ||| Sbjct 9879675 GT-TCCCAGTGCTGAATGGCTTTGGAAAGATCTACCTCATCCGCGGTCCAAAATGAGGCC 9879733 Query 48666 TCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAA 48712 || ||||| ||| ||| || ||| | || ||||| || ||||| Sbjct 9879734 TCGGCTTTCTTACACACATGCCAAGTGTCGTGGTATTCCATAGGGAA 9879780 Score = 100 bits (110), Expect = 4e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT-CCA 48545 ||||||| || || || || | |||| |||| ||||||||||||| |||||| ||| Sbjct 10657401 CTTCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCA 10657460 Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT 48605 || || |||||||| || || | | || ||||| ||| | || | || |||| Sbjct 10657461 TCGCTGGCAGCAAAGAAAGCCAGAATGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGG 10657520 Query 48606 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCC 48665 | ||||| | || ||||| || | |||||| || || || ||||||||||| ||| Sbjct 10657521 GCTTCCCAGTGCTGAATGTCTTTGGAAAGATCTACCTCCTCCGCCGTCCAAAATGAGGCC 10657580 Query 48666 TCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAA 48712 || ||||| ||| ||| | ||| || | ||||| || ||||| Sbjct 10657581 TCGGCTTTCTTACACACGTGCCACATGTGGTGGTATTCCATAGGGAA 10657627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694644147940960