Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13 118 2e-21 seq86 111 2e-19 seq59 107 3e-18 >seq13 Length=33879094 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| |||||||||||||| || || ||||| || ||||| | || Sbjct 19896916 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTGTAAGGTTCAATGGAC 19896857 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || ||||| || ||||||||||||||||| ||||| || || | | | ||| Sbjct 19896856 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGAAGACTG 19896797 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 19896796 TTTCTTATACCAT 19896784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| |||||||| ||||| || |||||||| || ||| Sbjct 19861960 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGGTTG 19861901 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || ||||| || || ||||| || |||| || | ||||||| Sbjct 19861900 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 19861841 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || || | ||| Sbjct 19861840 ATATGTTGCGGCCTTTC 19861824 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct 19877235 ATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 19877176 Query 76570 CATCAATGACCACTC 76584 |||||| ||||| || Sbjct 19877175 CATCAAAGACCAGTC 19877161 >seq86 Length=9768497 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| ||||| | |||||| ||||| ||||| |||||||| ||||| || || ||| Sbjct 5480119 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCTTG 5480060 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || | || ||||| ||||||||||| |||||||| || || || || || Sbjct 5480059 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGGCC 5480000 Query 46774 ACAAGTCTCTCTCC 46787 || | | |||||| Sbjct 5479999 ACCACGCGCTCTCC 5479986 >seq59 Length=15337887 Score = 107 bits (118), Expect = 3e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT-CCA 47034 |||| ||||| || || ||| | |||| |||| |||||||||||| |||||| ||| Sbjct 9879555 CTTCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCA 9879614 Query 47035 TCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT 47094 || || |||||||| || |||| || || ||||| ||| | || |||| |||| Sbjct 9879615 TCGCTGGCAGCAAAGAAAGCCAGAACGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGG 9879674 Query 47095 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154 | | ||||| | || |||| || | |||||| || || || ||||| ||||| ||| Sbjct 9879675 GT-TCCCAGTGCTGAATGGCTTTGGAAAGATCTACCTCATCCGCGGTCCAAAATGAGGCC 9879733 Query 47155 TCTGCTTTTTTATACATATTCCA 47177 || ||||| ||| ||| || ||| Sbjct 9879734 TCGGCTTTCTTACACACATGCCA 9879756 Score = 102 bits (112), Expect = 1e-16 Identities = 141/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT-CCA 47034 |||| ||||| || || ||| | |||| |||| |||||||||||| |||||| ||| Sbjct 10657401 CTTCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCA 10657460 Query 47035 TCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT 47094 || || |||||||| || |||| | || ||||| ||| | || |||| |||| Sbjct 10657461 TCGCTGGCAGCAAAGAAAGCCAGAATGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGG 10657520 Query 47095 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154 | ||||| | || ||||| || | |||||| || || || ||||| ||||| ||| Sbjct 10657521 GCTTCCCAGTGCTGAATGTCTTTGGAAAGATCTACCTCCTCCGCCGTCCAAAATGAGGCC 10657580 Query 47155 TCTGCTTTTTTATACA 47170 || ||||| ||| ||| Sbjct 10657581 TCGGCTTTCTTACACA 10657596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712909099740480