Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq118 102 2e-16 seq15 95.1 3e-14 seq54 91.5 3e-13 seq12 89.7 1e-12 >seq118 Length=4884071 Score = 102 bits (112), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || | | || ||||||||||| || | | || | ||||||| Sbjct 2270151 AGGACCAGGTGCAGGGTGTTCACCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 2270210 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || | ||| ||||| |||||||||||||| | | ||| || ||||| ||| Sbjct 2270211 TCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 2270270 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG-AAC---TCTCTACTTCAAGAGTAAT 152068 || || || |||||| |||| | || || || |||| || || || || || Sbjct 2270271 TGGATCTTGGCCTTGACATTCTCAGTGGTGGGTGTCACTGATCTCCACCTCGAGGGTGAT 2270330 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||| ||||||| ||||| ||||||| Sbjct 2270331 GGTCTTGCCAGTGAGGGTCTTCATGAAGATCTGCATT 2270367 >seq15 Length=31830809 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | | |||||||||||| ||||| ||||| ||||||||||| | ||||| | Sbjct 647112 GAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACA 647171 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||| ||| || || || |||||||| ||||| ||||| || | | || ||||| Sbjct 647172 TCCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTC 647231 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || ||| | | || ||||||| || || || || | Sbjct 647232 CTTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCAT 647291 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 || || || |||| ||| || || || || Sbjct 647292 GATGGTCTTCCCCGAGAGGGTTTTTACAAA 647321 >seq54 Length=16718083 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 || || || || |||||||| ||||||||||| || | | || ||||||| | || Sbjct 7272794 AGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATCTACCAGC 7272735 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || | ||| ||||| |||||||||||||| | || || | ||||| |||| || Sbjct 7272734 TGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCGGGGGA-ATGACCTCCTTGCCTTGGATC 7272676 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || |||| |||| | | |||| | ||| || |||||||| | || || | | Sbjct 7272675 TTGGCCTTGATGTTCTCAATGGTGTCACTAGGCTCCACCTCAAGAGTGTTGGTCTTACTC 7272616 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| ||||||| ||||| ||||||| Sbjct 7272615 ATGAGGGTCTTCATGAAGATCTGCATT 7272589 >seq12 Length=33761702 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 151919 TTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAG 151978 ||||||||| || || | | || |||||||||||| || | ||| |||||||| Sbjct 23446824 TTGGATGTTATAGTCAGACAGGGTATGCCCATCTTCTAGCTGCTTGCTGGCAAAGATAAG 23446765 Query 151979 CCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTAC 152038 || | |||||| || ||||| |||||||| ||||| || || |||||| |||| Sbjct 23446764 CCCCCGCTGGT-CGGGGAGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAGT 23446706 Query 152039 GCTGT--CTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | ||| ||| |||| | ||||| || || || || || | ||| |||||||||||| Sbjct 23446705 GGTGTTGCTG--GGCTCTGCCTCAAGGGTGATGGTCTTACCAGAGAGGGTCTTCACGAAG 23446648 Query 152097 ACCTGCATT 152105 | | |||| Sbjct 23446647 ATCCACATT 23446639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153778830128969