Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq118 120 6e-22 seq54 113 9e-20 seq4 98.7 2e-15 seq123 91.5 3e-13 seq81 89.7 1e-12 seq66 89.7 1e-12 seq64 89.7 1e-12 seq61 89.7 1e-12 seq22 89.7 1e-12 seq2 84.2 5e-11 >seq118 Length=4884071 Score = 120 bits (132), Expect = 6e-22 Identities = 169/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | |||||| || ||||| || | ||| | | || |||||||||||||||| Sbjct 2270135 ACCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGTTCACCTTCTGGATGTTGTAGTCAGA 2270194 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || || || || | ||||||||||| | || ||||| || Sbjct 2270195 CAGGGTACGCCCATCTTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 2270254 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT----T 283047 || |||||||||||||||||||| || || || | || | ||| | || | Sbjct 2270255 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAGTGGTGGGTGTCACTGATCT 2270314 Query 283048 CGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 | || ||||| ||||| ||||| || || | ||||| | ||| ||||||||| ||| Sbjct 2270315 CCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCATGAAGATCTGCATTGTCA 2270371 >seq54 Length=16718083 Score = 113 bits (124), Expect = 9e-20 Identities = 141/192 (73%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||||||||| || ||| | ||||| | || || || | ||||||| Sbjct 7272779 TCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATCTACCAGCTGCTTGCTGGCAAAG 7272720 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | || ||||| ||||| |||||||| |||||||||| || || | | | Sbjct 7272719 ATCAGCCTCTGCTGGTC-GGGGGAATGACCTCCTTGCCTTGGATCTTGGCCTTGATGTTC 7272661 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || || || || |||||| | ||||||| | | | ||||| | | Sbjct 7272660 TCAATGGTGTCACTAGGCTCCACCTCAAGAGTGTTGGTCTTACTCATGAGGGTCTTCATG 7272601 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 7272600 AAGATCTGCATT 7272589 >seq4 Length=43394159 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 34512108 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 34512166 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 32378150 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 32378208 >seq123 Length=4477440 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| ||||| || ||||| || | ||||| ||||| | ||||| || Sbjct 3008461 ACCCTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 3008520 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 3008521 GAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3008565 >seq81 Length=10036641 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4757431 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4757489 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4760120 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4760178 >seq66 Length=13365902 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 8708493 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 8708551 >seq64 Length=13971780 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 13242484 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 13242542 >seq61 Length=14742515 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 14727681 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 14727623 >seq22 Length=29017954 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||| Sbjct 2181843 TTAGTATAGTGGTGAGTATCCCCGCCCGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 2181901 >seq2 Length=58787292 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | ||||| || ||||| | | ||| || || |||||||||||||||| Sbjct 1920367 ACCTCCCCTCAGGCACAGGACCAGGGGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1920426 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||| ||||| || || | | ||||||||||| || | || || ||| || Sbjct 1920427 CAGGGTGCACCCATCTTCCAGCTCCT-CCCGGCAAAGACCAGCCTCTGCTGCTCAGGGGG 1920485 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || |||||||||||||||||||| || || || Sbjct 1920486 TATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC 1920518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046701125188706