Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq118 109 4e-19 seq15 102 6e-17 seq13 89.7 4e-13 seq54 87.8 1e-12 >seq118 Length=4884071 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || |||||||| || ||| || |||| ||||||||||| || | Sbjct 2270136 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGTTCACCTTCTGGATGTTGTAGTCAGAC 2270195 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| | ||||||||||| | |||||| |||| || Sbjct 2270196 AGGGTACGCCCATCTTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2270255 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGG---CGGAT-TC 44286 | || ||||| || ||||| ||| | | | ||||| | | ||| || Sbjct 2270256 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAGTGGTGGGTGTCACTGATCTC 2270315 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| | || || ||||| || ||||||||||||| |||||| ||||| Sbjct 2270316 CACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCATGAAGATCTGCAT 2270366 >seq15 Length=31830809 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||||| || ||||| ||| ||||||||| ||||||||||| | | | Sbjct 647113 AGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACAT 647172 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | | ||||| ||||| || || ||||||| | |||||||| | ||| | |||||| Sbjct 647173 CCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTCC 647232 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || ||| ||||| | || ||| ||||| | | | Sbjct 647233 TTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCATG 647292 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 || ||||| |||| |||||| || || || || ||| Sbjct 647293 ATGGTCTTCCCCGAGAGGGTTTTTACAAAAATGTGC 647328 >seq13 Length=33879094 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| || |||||||| ||||||||||| | | | Sbjct 14752890 AGTCTCAACACAAGATGAAGGATGGACTCCTTTTAAATGTTGTAATCAGACAAAGTACAT 14752949 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | |||||||| | || | |||||| Sbjct 14752950 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCATTGCTGATCAGGAGCAATTCCTTCC 14753009 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| | ||| | || ||| ||| | | | Sbjct 14753010 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGAGTCCGAGGGTTCACCCTTGAGCATG 14753069 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCAC-GAAGATTTGCATGATG 44341 || ||||||||| | ||||| || || || || |||||| || Sbjct 14753070 ATGGTCTTTCCCAT-AGGGTTTTTACAAAAAATCTGCATGTTG 14753111 >seq54 Length=16718083 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 44130 CCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCA 44189 ||||||| || ||| ||| || ||||||||||| || | || | || | || ||| Sbjct 7272796 CCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATCTACCA 7272737 Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249 ||||||| | ||||||||||| | |||||| || | || | | ||||| | | Sbjct 7272736 GCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTC-GGGGGAATGACCTCCTTGCCTTGGA 7272678 Query 44250 TCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||| || | |||||| | |||||||| | |||||||| | || | ||||| Sbjct 7272677 TCTT-GGCCTTGATGTTCTCAATGGTGTCACTAGGCTCCACCTCAAGAGTGTTGGTCTTA 7272619 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | |||||||||||| |||||| ||||| Sbjct 7272618 CTCATGAGGGTCTTCATGAAGATCTGCAT 7272590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359977944219663