Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq5 223 5e-53 seq18 113 6e-20 >seq5 Length=43145420 Score = 223 bits (246), Expect = 5e-53 Identities = 234/308 (76%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337 ||| || || | |||||| | | ||||| ||||| |||||| | |||| |||||||| Sbjct 25080050 ATCTGGGACACTGAACGCAGTGTAAGGACAGCCCTTCACGTTGTTGCAGATGAGAGACTG 25080109 Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCA 8397 ||| | ||| | |||| |||| | || |||||||||||||| || || || |||||||| Sbjct 25080110 AATGGAGGCGGTGTTGATGATCTCAAAACCCACGTCTCCGCCAAAAGTACTCGGCTTCCA 25080169 Query 8398 GTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457 ||| ||| || || ||| ||| ||||||| ||||| | |||||| || || |||| Sbjct 25080170 GTAATGCGGCGAACATATGGGGTTACCCATGAGTCCTTTCAAGGAGAAGGGCGCGCCCAT 25080229 Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517 ||| | ||| |||||||||||||||||| || || ||||||||||||| | |||| Sbjct 25080230 CTCCACCATGGTCTCACCGAAGATGGCGTCTGGGCGAGGCTTTTCCACCAGAAGGCCGGG 25080289 Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577 |||||||||||||| || | ||| || || ||||| || || ||||| || ||||| Sbjct 25080290 ATACAGCTCCACAGCATCAATGTCACCATAGAGGGCTTCCAGCTCTGCAGCCATTTCCTT 25080349 Query 8578 TTCTCCTG 8585 ||||||| Sbjct 25080350 CTCTCCTG 25080357 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 9253 GTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCAC 9312 || |||||||| | |||| || ||| ||||||||||| || ||||| || |||||| Sbjct 25081836 GTTGTCTGGAATAAGCGCTCATCGTCCCACTCTGGATGTTCCTGCTTCAGCACGTCGCAC 25081895 Query 9313 ACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCA 9372 || ||||| || |||| |||||||| |||||||||||||| || || || ||||||||| Sbjct 25081896 ACTCTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGACCCGGCACCAGGCCA 25081955 Query 9373 AAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATG 9432 || || || || ||||| | |||| | || || | | ||| || ||||||||| Sbjct 25081956 AAGAGCTGCTGGCCTACAGCAAAACGCGCCTGCTCAGGGATGTGGGGCGGGTAGATCATG 25082015 Query 9433 TGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 | | || || || || | ||| || ||||| || || | ||| |||| Sbjct 25082016 TCTGCTTGAGTATCCTTAACTGTGGGAGGGTACATCTCTCCATGAATTATCT 25082067 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| ||||| ||| | ||||| || || ||||| | ||| ||| | || Sbjct 25083022 CTTACCCCATGGCCCAGGCCTGTGGTGAAAGCTGGCCCTCGTTTCTGATCTGTCTTGAAG 25083081 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || ||||| || ||| |||| || | ||||| | || ||||| ||||| || Sbjct 25083082 AACTGATGGGTGAAGTGCTGGGCAAAGAAAGTGAACATCATATTTGTGCCTTGGGGGTCA 25083141 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| |||| | |||||| ||||||| ||| Sbjct 25083142 GGGATGAACTTCCTTCTCAGAAGAACCTTTTCCAGAAC 25083179 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 10387 CTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTGTACTG 10446 |||||| || ||||||| | ||||||| || || | ||||| ||||| ||||| | Sbjct 26493767 CTTACGTGTAGTGCAGTTTTCACCGTAGAAGCCGGTCCGGGTGCAGTCGCACTTGTAGCG 26493826 Query 10447 ATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAAGGGTT 10506 | || || ||||||||||| |||| |||||||||||| | ||| || ||||| || Sbjct 26493827 GTCAAAGCCTACGGTCATGCATTCCCCTCGGTTTTGACACGGGTTGGAACAGCAAGGATT 26493886 Query 10507 GGCTACGAT 10515 |||||| || Sbjct 26493887 GGCTACAAT 26493895 Score = 87.8 bits (96), Expect = 3e-12 Identities = 177/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||||||||| || | ||||| || || | Sbjct 25081324 CTTACCCTGCCAGCAATTTGCTTGGTGAACGATTCCACAAATGTGGTAAGTCCATGTTCC 25081383 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063 | | ||| || |||||||||| || | ||| ||||| | ||| |||| | Sbjct 25081384 ACTAATATAGAGTTGTTGTAGAGAAACTGCTGAAAGTTATACTCCTGGTCATCGATCTGA 25081443 Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 || | || |||| || | |||||||||||| | |||||||||| ||| || || Sbjct 25081444 AAGGTGTCAGGCACCAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGAAGCAATGCGG 25081503 Query 9124 TTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGG 9183 || ||||||||||| ||||||||||| || | |||| ||| | || || Sbjct 25081504 TTCTGGTACTGGAATTGTTGGTTGAAGAGCAGTTCTGGGTCAAACTTCAGTTTGAAGTGA 25081563 Query 9184 TAGCCGCTGAGCTGCTGAACGTA 9206 || ||||| | ||||| || || Sbjct 25081564 TATCCGCTCAATTGCTGTACATA 25081586 >seq18 Length=30119850 Score = 113 bits (124), Expect = 6e-20 Identities = 194/282 (69%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| |||| |||| |||||| || || | || || | ||||| || | Sbjct 5679595 GGACAGGTCTTGGTGTTGAGACAGACCAGCTTCTTCAGGGTGGCCGTGTTGACAATGTTG 5679654 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || |||| || || || || ||||| |||||||||||| | || || |||||| ||| Sbjct 5679655 AAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 5679714 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | ||| || |||||||| || |||||||| | ||||| || ||||| || |||||| Sbjct 5679715 CCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTCGATCATACTCTCCCCAAAGATG 5679774 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | ||| || || ||||| | | || || | ||| | ||| | || |||| |||| Sbjct 5679775 GAGTTCGGTAGGCATTTTTCAAGAAGCAACCCTGGGTAAAACTCTAAGGCATCGATGTCT 5679834 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | || || || || || |||||||| || ||| Sbjct 5679835 CCATATAACTCCTCCAGCTCAGCTGCCATCTCCTTGTCCCCT 5679876 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| || || ||||| ||| ||||| Sbjct 5687342 TCACCTATGAGGATGAGGCGGGTGGTCTGGAAGAGCTGTTCGTCTTCCCAGGTGGGATGC 5687401 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | |||||||| | |||||| || | ||||||| |||||||| | | Sbjct 5687402 TCCGCCTTCAGCAGGTCGCACACACGGTTGTGCTCACGCAGCCAGAGTGTGGCGTAGAGC 5687461 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| || | ||| ||||| ||||||| || ||||||| Sbjct 5687462 ATGAGCCCCGGCAGCAGCCCAAACACCTCTTGGCCCACAGCCA 5687504 Score = 105 bits (116), Expect = 1e-17 Identities = 109/141 (77%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || ||||||||||| |||| | || |||||| | || || || ||| | |||| Sbjct 5689425 GTACTTACCCCATGGCCCAAGGCCTTGGTGAAGCCTGGACCCATCTTGCCGGA--AGTCT 5689482 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 |||| |||||||||||||||||||| |||| ||||||||||| | ||| ||||| |||| Sbjct 5689483 TAAAGAACTGGTGCGTGAAATGTTGTGCAAAGAAGGCAAACATGAGGTTTGTGCCTTGGG 5689542 Query 9765 GATCGGGAGTGAAGGTCCTCC 9785 |||| || |||| |||||| Sbjct 5689543 GATCAGGGATGAATTTCCTCC 5689563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716851359834560