Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq118 105 2e-17 >seq118 Length=4884071 Score = 105 bits (116), Expect = 2e-17 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGC----TC 177979 || || ||| |||| || ||||| || || || ||||||||||||||||| | | | Sbjct 2270363 CAGATCTTCATGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGATCAGTGAC 2270304 Query 177980 AGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 178039 | ||||| ||||| ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 2270303 ACCCACCACTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 2270244 Query 178040 GCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 ||| | || ||||| ||| | || ||||| |||||||| | || || | || || || Sbjct 2270243 GCAGAGGCTGATCTTTGCCAGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 2270184 Query 178100 CGTCCAAAA 178108 | |||| || Sbjct 2270183 CATCCAGAA 2270175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203687414653766