Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1138 87.8 2e-12 >seq1138 Length=537340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| || || || || ||||| || | ||||||||| ||| || |||| Sbjct 332743 CCTCGTCTCTGCTAATGAGCTCATTGGAAAAGGTGAGGCCGGGCATCAGTCCCCGCTTCT 332802 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||| ||||| || ||||| |||| ||||| | Sbjct 332803 TGAGCCAGAATATTGATGCAAAAGAACCAGAGAAGAAGATCCCCTCCACGGCAGCAAAGG 332862 Query 17106 C 17106 | Sbjct 332863 C 332863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516839460783360