Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq786 241 1e-58 seq2476 105 5e-18 >seq786 Length=828056 Score = 241 bits (266), Expect = 1e-58 Identities = 389/557 (70%), Gaps = 2/557 (0%) Strand=Plus/Plus Query 18790 GGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACT 18849 ||||||| ||||| |||| || ||| ||||||||||||||||||| || || |||||| Sbjct 610228 GGGACCTGGGCCCGGTTTATGGTTTCTAGTGGAGACATTTTGGAGCAGACTACAAAGACA 610287 Query 18850 GTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTA 18909 | | ||| | || | |||||| | || |||||||||| || || || || || | Sbjct 610288 GAGATTCAGATTACTCGGGCCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCA 610347 Query 18910 AAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCT 18969 |||| ||||| || | || | | | |||| | ||||| ||||| || | ||| Sbjct 610348 AAACCAACCCTGATGACAGAATATTAACCATATGTGCCTGGAACCCAAAAGACCTTCCCC 610407 Query 18970 TAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTAT 19029 | |||| | | ||||| || || | | ||||| || || || | ||| || || | | Sbjct 610408 TGATGGCAATGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTAAATGGGGAGCTGT 610467 Query 19030 CCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTG 19089 | |||||| | |||||||| || || ||||||||||| || || || ||||||||||| Sbjct 610468 CTTGCCAACTTTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTCAACATTGCCT 610527 Query 19090 GATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAA 19149 | ||||| || ||||||| ||| | || || | ||||| || || | || ||||| Sbjct 610528 GTTATGCCCTGCTTACCTCCATGATTGCACACATCACAGGCCTGAAGCCAGGTGATTTTG 610587 Query 19150 TTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGC 19209 | ||||| |||| |||||| |||||| |||||||||| || | | | | | |||| Sbjct 610588 TCCATACTTTGGGAAATGCACGTATTTATCTGAATCATATCGAGCCACTGAGAATTCAGC 610647 Query 19210 TAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA-TATA 19268 | ||| |||| ||||| || || ||||| ||| ||| || ||| || Sbjct 610648 TTCAGCGAGAACCAAGACCTTCCCCAAAGCTCAAAATCCTTCAAAAAGT-TGAGACAATT 610706 Query 19269 AACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAA 19328 | || || ||| || || |||||| |||| || ||||||||||| || | | ||| Sbjct 610707 GATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGTTATAATCCACATCCAACGATTAAA 610766 Query 19329 ATGGAAATGGCTCTTTA 19345 ||| |||||| | |||| Sbjct 610767 ATGAAAATGGTTGTTTA 610783 >seq2476 Length=158986 Score = 105 bits (116), Expect = 5e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| ||||| || || | | ||||| || || || | ||| Sbjct 45577 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGAAAAT 45636 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | || |||||| | |||||||| || || ||||||||||| || || || ||| Sbjct 45637 GGGGAGCTGTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTC 45696 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCA 19120 |||||||| | ||||| || ||||||||||| |||| || Sbjct 45697 AACATTGCCAGCTATGCCCTGCTTACCTACATGATAGCACA 45737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398972543823840