Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq786 203 2e-47 seq1075 149 5e-31 seq863 116 3e-21 seq205 98.7 7e-16 >seq786 Length=828056 Score = 203 bits (224), Expect = 2e-47 Identities = 493/741 (67%), Gaps = 12/741 (2%) Strand=Plus/Minus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592 |||||| |||| | ||||||||| | || ||||| ||||| ||| ||| | || ||| Sbjct 610783 TAAACAACCATTTTCATTTTAATCGTTGGATGTGGATTATAACCTTC-AATCTGAAAGTC 610725 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || |||| || |||||||| ||| ||| | | | | || |||| | || Sbjct 610724 TTCAACTTTGAAATCATCAATTGTCTCAACTTTTTGAAGGATTTTGAGCTTTGGGGAAGG 610665 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 ||| || |||| | ||| ||| | || | || || |||| | ||| || | || Sbjct 610664 TCTTGGTTCTCGCTGAAGCTGAATTCTCAGTGGCTCGATATGATTCAGATAAATACGTGC 610605 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 || ||| | |||||||| ||| || || ||| || |||| || ||||||||| | Sbjct 610604 ATTTCCCAAAGTATGGACAAAATCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGGA 610545 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832 || | || | ||| | |||||||| || ||||| || | |||||||| |||| || Sbjct 610544 GGTAAGCAGGGCATAACAGGCAATGTTGAAGGGCACACCCAGGCCCATATCTCCTGACCT 610485 Query 101833 TTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACA 101892 || || ||||| || || |||| |||| ||||| ||||||| | |||| || Sbjct 610484 CTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACATAGAATTGACAGAGGGCATGGCA 610425 Query 101893 AGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACAT---TAACATCCT 101949 ||| |||| |||| |||| |||| ||||| ||||| || ||| || || Sbjct 610424 AGGAGGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCCAGGCACATATGGTTAATATTCT 610365 Query 101950 TCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTC 102009 ||| |||||| ||||| || || ||||||| | || | ||||| ||||||| Sbjct 610364 GTCATC---AGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTG 610308 Query 102010 TCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCC 102069 || ||||| | |||| || |||||||| ||||| ||||||| || || Sbjct 610307 GCCCGAGTAATCTGAATCTCTGTCTTTGTAGTCTGCTCCAAAATGTCTCCACTAGAAACC 610248 Query 102070 ATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGA 102129 ||| || || || || || | ||| | || || | || || || | || |||| | Sbjct 610247 ATAAACCGGGCCCAGGTCCCATTCCTGTCATGCAGAGAATCCCAGGCTGTCCGAAAA--A 610190 Query 102130 TCTAG--ATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCA 102187 ||||| | ||||| |||||||| || ||| || | | || || | || | | Sbjct 610189 TCTAGGGACCCATTGGCATCCCATATTCTCACTCCCTCGGAGGACAGTTGCTTACCATTT 610130 Query 102188 GTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTA 102247 || || ||| |||||||||||| || ||||||| ||| || |||| || |||| || Sbjct 610129 GTGGAGCCTTTGATAAACCACAGCAACTCTTCAAAAACTCCCTTCCAGAACACTCATTTG 610070 Query 102248 GTAGTTAAAAGTGGAAATTCA 102268 || || | || ||||||||| Sbjct 610069 GTTGTGAGCAGAGGAAATTCA 610049 >seq1075 Length=586158 Score = 149 bits (164), Expect = 5e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| | || | | | ||||||| | |||||| |||||||| ||| ||| |||||||| Sbjct 428386 TTAGGCCACGTGGCGGACAATGGAGGAAACGCAGGTGCAGCCCACACCCACCAGCATCTT 428445 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 ||| | || || || ||| ||| | | || | | | || || || |||||||| Sbjct 428446 CTCCATCCGGAAGGAGACAGGACAGTTCTCAGGCTCCCTCCTCAGGACCAGGATCTCTTG 428505 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115 ||||| | || ||||||||||||| ||| | ||||| ||||| || ||||| | Sbjct 428506 CTGGATGAGAACAGAGTTCATGTGGTGGTCCAACTTCCCCTCAGCGTTGACACAGCGCTG 428565 Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| |||||||||||||||||||| |||| |||||||| Sbjct 428566 GTGGCGGCACTCTGCCTCCCAGATCACAGAGGGATATCTATCAGGATCCTCATTGCG 428622 >seq863 Length=755488 Score = 116 bits (128), Expect = 3e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || || ||||| ||||||| |||||| |||||||| ||||||| |||||| ||||| Sbjct 477959 TTGTAAACGGAACTGCCTCCAACTATCCAAACCATGTCCACTTTATCTGCTAACTCTGGT 478018 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 ||||| |||||||||| ||||| || | ||| || || | ||||||||||| ||||| Sbjct 478019 TGTTCAATAAGTTTTAAGGCATCGTCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGG 478077 Score = 105 bits (116), Expect = 5e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||| || || ||||||| |||||| || ||||| Sbjct 475119 AAGTTTATATTTCTCCAAATCAATTTCTGGGAAGAACGTGTCACTTTCAAATTCCTGCAT 475178 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||| ||| | |||| || ||| | | |||| ||||| || Sbjct 475179 GATCCTTGTCACAAAGAGTCTGAGATGGCCTGGCTGATTCATGGCTTCCTT 475229 Score = 98.7 bits (108), Expect = 7e-16 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | |||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 485712 CTTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 485771 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||| | ||||||||| || Sbjct 485772 AATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 485820 >seq205 Length=2125742 Score = 98.7 bits (108), Expect = 7e-16 Identities = 303/473 (64%), Gaps = 47/473 (10%) Strand=Plus/Minus Query 3978 CTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAAC 4037 ||||||||| |||||| ||| ||||| | | ||| || || || || | |||||| || Sbjct 2103756 CTTCTCATAGACTTCAGGTTTATACTTGGTGCCTTTTTCCTCCTGGACCTCAGAAAGGAC 2103697 Query 4038 ACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTC 4097 || ||| |||||| | || || ||| || | ||||| |||||| |||| |||| Sbjct 2103696 ACCTGGGTATTCTGGGAGAACTTA-TATCTCCCCTAATCAATTTCTGGGAAAACCATGTC 2103638 Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 || |||| | |||||||||||||| ||| |||||| || | || ||| | Sbjct 2103637 ACTTTCAGATTCTTGCATGATCCTTGTC----CCAGTTTGAGGTAGCCTGGCT------- 2103589 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217 || ||| ||| ||||||||||||||| ||| Sbjct 2103588 -GC------------------------------CCAAACCTTGTCTACTTTATTTGATAA 2103560 Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277 || || | || |||||||||| |||| || | || || || | | ||||||||| Sbjct 2103559 CTCCGGTTTGTCAATAAGTTTTAAGGCATTGTCCAGGCTTTTGGCAAGAGAATGAGCTCC 2103500 Query 4278 ATGTGGAAGCTCCTTTAGTTCCT--TGCTGAGAACAACATTAATTCT-GCCTTTTAAAG- 4333 |||| | ||||| || | | | |||||||| |||||||| | || | || Sbjct 2103499 TTGTGATGGTTCCTTGAGATGGTTCTACTGAGAACTGTGTTAATTCTATTCGTTAACAGC 2103440 Query 4334 GCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT 4393 || || |||||||||| |||| || || || | | |||||| | | ||||| Sbjct 2103439 CCCTTTTTTTCTCAGGAACAGAGATTCAGGTTTTCCCATCTGTAATCATCAGGTCCTGTT 2103380 Query 4394 TATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 || || || |||| | | |||||||||||| | ||| || || ||| Sbjct 2103379 TACCTTCCACTGAAGGAGCTGAGGTCATTCTTTGGGAGAATTTGAACTCCTTC 2103327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360770631141152