Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10632 131 2e-25 seq1179 131 2e-25 seq474 96.9 4e-15 seq1492 87.8 2e-12 >seq10632 Length=3166 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 1723 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 1664 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1663 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1604 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 1603 CTGTTTCTTACACCATA 1587 >seq1179 Length=509559 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 478449 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 478390 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 478389 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 478330 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 478329 CTGTTTCTTACACCATA 478313 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 482006 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 481947 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || |||||||||||||| || || || || || ||||| || | || |||| Sbjct 481946 TTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGACAGTCT 481887 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 53031 |||| | |||||||| | ||| ||||| | | |||| Sbjct 481886 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTT 481850 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 ||||||| || || || || | || || ||||| ||||| || || || || || || | Sbjct 474950 CATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 474891 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||| ||||| ||||| | |||||| | || ||||| |||| |||||||||| Sbjct 474890 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTCTCAAATGGAT 474831 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | || || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 474830 ATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 474771 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 474770 GTTTATTTGA 474761 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 462143 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGACACAGCAATCCTGGCTGCTAAGA 462084 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| | || || | |||||| |||| Sbjct 462083 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 462024 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941 ||| || || || || ||| |||| | |||||||| || ||||| | |||| Sbjct 462023 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGGTGATTT 461970 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || || Sbjct 471856 CACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTG 471797 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||| || |||||||| || || || | || |||||| | | || || | ||||| || Sbjct 471796 TTCTTCCTTTCCTGTGTTTTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGG 471737 Query 54148 TTCCAAGTATAT 54159 |||| ||| || Sbjct 471736 CTCCAGGTAAAT 471725 >seq474 Length=1313924 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||| || || || | ||||| |||||||||||||| ||||| ||||| | ||| | Sbjct 1049862 CCTCGTCCCTGCTGATCAGCTCGTTTGAAAACGTGAGTCCTGGCATGAGGCCTCTCTTCT 1049921 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| | ||||| || ||||| |||||| |||||| | || || |||| Sbjct 1049922 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAACCGCCTTCTCCGGCGGCGAAGG 1049981 Query 24277 C 24277 | Sbjct 1049982 C 1049982 >seq1492 Length=368978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 200/292 (68%), Gaps = 13/292 (4%) Strand=Plus/Minus Query 154822 TCCCTCTA-TACTCTCATCTTTTGCCAACACAGAGGGTGGATATTTGTTCATTGGATTGG 154880 |||||||| | |||| | ||||||||||| || || |||||| |||| ||||| ||| Sbjct 344494 TCCCTCTAATTGTCTCTGCATTTGCCAACACGGACGGAGGATATCTGTTTATTGGTTTGA 344435 Query 154881 ATAATAATACACACAAAGTAATTGGATTCATGGCGG--GACACGACTGCATTAAACTGAT 154938 || | || | | | || ||||||| || | || | || | || | || | || | Sbjct 344434 ATGAAAAGAAAAAACAAATAATTGGCTTTAAAGCAGATGAGA-GAAAAC-TTGAGGTGCT 344377 Query 154939 AGAGAATGAGATAGAAAAGTGTATTAGACGACT-CATGTTGTACATTTCTGTGAGAAAAA 154997 | || ||| ||||| ||||| ||| ||| || | ||| || ||||||||| | | Sbjct 344376 AAGGAGTGAAATAGAGAAGTGCATTGGACACCTGCCTGTCACTCACTTCTGTGAGGAGGA 344317 Query 154998 G-AGGATATCAAATACGCATATAGATTCATCAAGGTATATAAACCTGGGGAGGAGACTAC 155056 | || | || || ||| ||| | ||||||| | || | | || |||| ||| Sbjct 344316 GGAGAAGATAAAGTACACATGCAAATTCATCCAAGTCCACAGACA-----AGGA-ACTGT 344263 Query 155057 CTCGACATACGTGTGCGCTATCAAAGTGGAAAGATGTTGCTGTGCTGTGTTT 155108 | |||| || || ||| ||| |||||| |||| |||||||||||||||| Sbjct 344262 GTGTTCATATGTCTGTGCTCTCAGAGTGGAGAGATTTTGCTGTGCTGTGTTT 344211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592911526248960