Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq209 212 8e-50 seq60 100 3e-16 seq281 86.0 8e-12 >seq209 Length=2118178 Score = 212 bits (234), Expect = 8e-50 Identities = 254/345 (74%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || ||| |||||||| || ||||| || || | | | | ||| | ||||| |||||| Sbjct 1997385 GCTGGGACAGCAGGGCTTCTATGTCAGGTTCAATGTCGATGGTGCGAAAGCGGCGGCTGT 1997326 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 |||||||||| || ||||| | ||||| | ||||||||| ||||||||||| | || Sbjct 1997325 ACCTGCGCACTGGAACACCGTCGGGGCCCACTAGGAACTTCTCAAAGTTCCAGGCAATGT 1997266 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 ||||||||||||| |||||||| ||| || |||||| ||| ||||| | | Sbjct 1997265 CGTTGCGGCACACCGGAGACCAAATGATGTACTTGGGGTCTGTCATGAGCGCAGTGGGAT 1997206 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 |||| || ||||| ||||| | ||| || ||||||| |||||||| || ||| | ||| Sbjct 1997205 CGTCACTGGGCGCTGGCAGAGACTCCCGCAGGAAGGTAAAGAGCGGGTGAGCCTTCTCAC 1997146 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 | |||||||||||||| ||||| | ||||||| || ||||| || || || |||| Sbjct 1997145 CATTGACCTCGCACTTTTCGAACAATGTAAAGTTGGGTTCGAACCCCCCACCGGGTCGGA 1997086 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 | ||| |||||| || ||||| | |||| ||| || |||| Sbjct 1997085 TATACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGCATTCTCCT 1997041 Score = 154 bits (170), Expect = 2e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || |||||||| || ||||| |||| || || | || |||| Sbjct 1996838 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCACCAAGCCACGGGGCCCGAGGC 1996779 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | |||||| |||||||||| ||||| ||||| ||| | |||||||||||||| | Sbjct 1996778 GTTTCTGCAGATCGTTCATCTCGGTGTAGTCCCGAGTCGTTGTTCCTCAGAGGGACGCGA 1996719 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | |||| | |||||| || || || || | Sbjct 1996718 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACGGGCTCCCCGCCCG 1996659 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | | |||||| || |||||||| ||||| Sbjct 1996658 TCAGCGGGCGCGCGGAGAAGGCATACAC 1996631 >seq60 Length=3472332 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 50466 TGCTCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACT 50525 |||| ||| || |||| ||||||||||| || |||||||||| || ||| | |||| Sbjct 621260 TGCTGGTGCACCTGTTCCCAGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTATAACT 621201 Query 50526 GCTACGGCTCCATGGGCAAGCGCAGGCTCGA-CCCGCTACGCCTGCGCTTGCTCCGGCAC 50584 || ||| ||| |||||||| ||| || ||||| |||| | | ||| |||| ||| Sbjct 621200 GCAGCGGGTCCCTGGGCAAGAAACAGCTGGATCCCGC-ACGCATAAGGTTGATCCGCCAC 621142 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 ||||| ||| |||| |||| || ||||| |||||||||| ||||| || Sbjct 621141 TATGTTCAGCTGCTCTACCCTCGAGCCAAGAACGACCGCGTGTGGACTCTGGAGTTCGTG 621082 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGC 50671 | |||||||||||||| || ||| Sbjct 621081 GGCAAGCTGGACGAGCGCTGTCGACGC 621055 >seq281 Length=1822872 Score = 86.0 bits (94), Expect = 8e-12 Identities = 223/334 (67%), Gaps = 6/334 (2%) Strand=Plus/Plus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||| ||||| | | | ||| ||| || | ||||||| | ||| | ||| || Sbjct 75814 GATGTCAGGCTCGATGTTGATGGTTTGGAAGGTGCGGCTGTAGCGGCGGAATGGCTCCCC 75873 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | || | | ||||||||| |||||||||||||| || ||||| ||| ||| Sbjct 75874 CTCTGGCCCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACCGGACT 75933 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| ||||||| ||| ||| ||| ||| | | | ||| || ||| ||||| Sbjct 75934 CCACATGATGAGCTTGGGATCGGTCATGAGGGAGAACGGGTCATCATAAGGGTAGGGCAG 75993 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATG-TGCCCTTGCACCGTTGACCTCGCACTTCT 83306 ||| ||| |||| |||| ||||| || ||| |||||||| || ||||| | Sbjct 75994 CTTGTCTTTCAGGTAGGCAAAGACAGGATGCTGGTTCTGC-CCGTTGACATCACACTTTT 76052 Query 83307 CG--AAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGG 83364 | ||| || |||| | |||| | | || |||||| ||||| | ||| ||| Sbjct 76053 GGGTAAG-GCTGAAAG-TGGGCTGGTACCCACCCCCAGGGCGGACATACTTGAGGCTGTT 76110 Query 83365 CAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGA 83398 || |||||| | ||||| ||| |||||| || Sbjct 76111 CAGGATCTCCTCGTTCTGACAGTTCTCCTGGAGA 76144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607966157646080