Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq786 152 4e-32 >seq786 Length=828056 Score = 152 bits (168), Expect = 4e-32 Identities = 481/738 (65%), Gaps = 8/738 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 |||||| |||| |||||| || | || | || ||||| ||| | || ||| Sbjct 610783 TAAACAACCATTTTCATTTTAATCGTTGGATGTGGATTATAACCTTCAATCTGAAAGTCT 610724 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTT-AGTGTTGGGAAAGG 97016 | |||| ||||||||||| | ||| |||| || | ||| || ||||| |||| Sbjct 610723 TCAACTTTGAAATCATCAATTGTCTCAA-CTTTTTGAAGGATTTTGAGCTTTGGGGAAGG 610665 Query 97017 CCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGC 97076 || || |||| |||||| | | || | || || ||||||| |||||| | || Sbjct 610664 TCTTGGTTCTCGCTGAAGCTGAATTCTCAGTGGCTCGATATGATTCAGATAAATACGTGC 610605 Query 97077 ATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACA 97136 || ||| ||||| || | ||| || || || | | |||| || || ||||| | Sbjct 610604 ATTTCCCAAAGTATGGACAAAATCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGGA 610545 Query 97137 AGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCT 97196 || | || | ||| | |||||||| || ||||| || || |||||||| |||| || Sbjct 610544 GGTAAGCAGGGCATAACAGGCAATGTTGAAGGGCACACCCAGGCCCATATCTCCTGACCT 610485 Query 97197 TTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACA 97256 || || | || || || |||| |||| |||||| || |||| | |||| || Sbjct 610484 CTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACATAGAATTGACAGAGGGCATGGCA 610425 Query 97257 GGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCT 97316 || |||| ||||| |||| ||| ||||| ||||| || | | |||| Sbjct 610424 AGGAGGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCCAGGCACATATGGTTAATATTCT 610365 Query 97317 ATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCC 97376 || ||||| || | ||||| | ||| | | | | || || || |||| || Sbjct 610364 GTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGGCC 610305 Query 97377 ACCATAAT-TGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCAT 97435 |||| || | | | ||| || |||||||||||||| ||||| | ||| |||| Sbjct 610304 CGAGTAATCTGAATCTCTGTCTTTG-TAGTCTGCTCCAAAATGTCTCCACTAGAAACCAT 610246 Query 97436 AAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACC 97495 |||| || || ||||| | ||| | || || |||| || || | || || | | | Sbjct 610245 AAACCGGGCCCAGGTCCCATTCCTGTCATGCAGAGAATCCCAGGCTGTCCGAAAA--ATC 610188 Query 97496 TA--GATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGT 97553 || || ||||| |||||||| || ||| || | | || | || | | || Sbjct 610187 TAGGGACCCATTGGCATCCCATATTCTCACTCCCTCGGAGGACAGTTGCTTACCATTTGT 610128 Query 97554 AGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGT 97613 || ||| |||||||||||| ||| ||||| | ||| || |||| || |||| || || Sbjct 610127 GGAGCCTTTGATAAACCACAGCAACTCTTCAAAAACTCCCTTCCAGAACACTCATTTGGT 610068 Query 97614 TGTTAAGAGAGGAAAATC 97631 ||| | |||||||| || Sbjct 610067 TGTGAGCAGAGGAAATTC 610050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346322676712640