Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq40 122 8e-23 seq1045 116 3e-21 seq97588 109 5e-19 seq1071 102 7e-17 seq130 102 7e-17 seq370 82.4 7e-11 >seq40 Length=4171579 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 2180044 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2179985 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| |||||||| ||||| || ||||||||||| || Sbjct 2179984 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 2179925 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || || ||||| | ||| | || ||| Sbjct 2179924 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTG 2179865 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || |||||||||||| Sbjct 2179864 CCGGTCAGGGTCTTCACGAAAATCTGCATG 2179835 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 2179816 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2179757 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| |||||||| ||||| || |||||||| || || Sbjct 2179756 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 2179697 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 2179696 ATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTG 2179637 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || || ||||| Sbjct 2179636 CCGGTCAGGGTCTTCACGAAGATTTGCAT 2179608 >seq1045 Length=604390 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| ||| || | ||| ||| || Sbjct 14360 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 14419 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||||||||| Sbjct 14420 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14479 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | |||| |||||| || ||||||||| | ||| | || ||| Sbjct 14480 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 14539 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 14540 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14568 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 14588 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 14647 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| | | |||||| || || || |||||||||||||| Sbjct 14648 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14707 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | |||| |||||| || ||||||||| | ||| | || ||| Sbjct 14708 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 14767 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 14768 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14796 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| ||| || | ||| ||| || Sbjct 13676 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 13735 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||||||||| Sbjct 13736 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 13795 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || | || || | |||| |||||| | ||||||||| | ||| | |||||| Sbjct 13796 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 13855 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 13856 CCTGTCAGGGTCTTCACAAAGATCTGCAT 13884 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| ||| || | ||| ||| || Sbjct 13904 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 13963 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||||||||| Sbjct 13964 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14023 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || | || || | |||| |||||| | ||||||||| | ||| | |||||| Sbjct 14024 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 14083 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 14084 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14112 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| ||| || | ||| ||| || Sbjct 14132 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 14191 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||||||||| Sbjct 14192 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14251 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || | || || | |||| |||||| | ||||||||| | ||| | |||||| Sbjct 14252 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 14311 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 14312 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14340 >seq97588 Length=222 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 20 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 79 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| |||||||| ||||| || ||||||||||| || Sbjct 80 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 139 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || || ||||| | ||| | || ||| Sbjct 140 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTG 199 Query 118710 CCGGTCAGAGTTTTTACAAAAAT 118732 |||||||| || || || ||||| Sbjct 200 CCGGTCAGGGTCTTCACGAAAAT 222 >seq1071 Length=588399 Score = 102 bits (112), Expect = 7e-17 Identities = 135/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 118554 TGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGA 118613 || |||||||| ||| || ||||| ||| || ||||| || || || |||| || Sbjct 405707 TGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAGATTAGC 405766 Query 118614 CGCTGCTGATC-GGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672 | | |||| || ||| ||||||||||||||||| || ||| || || | || | Sbjct 405767 CTCAGCTGGTCAGGGGGGTATGCCCTCCTTGTCCTAGATCTTTGCCTTGACATTCTCAAT 405826 Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732 ||||||| || ||||||||| | ||| | || || |||||||| || || ||||| || Sbjct 405827 GGTGTCCCTGGGCTCGACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGAT 405886 Query 118733 CTGCAT 118738 |||||| Sbjct 405887 CTGCAT 405892 >seq130 Length=2658597 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || ||||||||||| || |||| |||||| Sbjct 942300 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCAGCCATCCTC 942241 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || | || || | |||||| || | || ||||| ||||| ||| Sbjct 942240 CAGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATCTTG 942181 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| || ||||||||| | || | || || Sbjct 942180 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 942121 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || ||||| ||||||||| Sbjct 942120 GCCCGTCAGGGTCTTCACAAAGATCTGCATG 942090 >seq370 Length=1552371 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||| || || |||||||| || || ||||| ||| || Sbjct 218102 ACCAGGTGCAGGGTGCACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 218043 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT-ATGCCCTCCTTGTCTGT 118648 ||||| || ||||| || | || | ||||| || || ||| |||||||||||||| Sbjct 218042 AGCTGCTTGCCAGCAAAGTTCAGCCTCTGCTTGTCAGGGGGTGATGCCCTCCTTGTCCTG 217983 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | |||||| || ||||||||| | ||| | || || Sbjct 217982 GATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCGACCTCTAAGGTGATGGTCTT 217923 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||| || || |||||||| Sbjct 217922 ACCAGTTAAGGTTTTCACGAAGATCTGCAT 217893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433253279757184