Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq186 87.8 3e-12 >seq186 Length=2216755 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||| || ||| | |||||||| |||||||| || |||||| | || ||||| Sbjct 1746717 GCATTTTTTGGGGCCCAGATGAATTCTTTCATCCATGTGATCATGTACTCCTACTATGGA 1746776 Query 52117 ATGGCCGC-TTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 || | || || | ||| | |||||| ||||| |||||||| || || ||||| || Sbjct 1746777 CTGACTGCATTCGGCCCCTGGATCCAGAAA-TATCTTTGGTGGAAGCGATACCTTACCAT 1746835 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 1746836 GCTGCAGCTGGT 1746847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921937190286080