Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1045 136 3e-27 seq1071 111 1e-19 seq40 107 1e-18 seq370 100 2e-16 seq130 98.7 6e-16 seq97588 96.9 2e-15 seq59 95.1 8e-15 >seq1045 Length=604390 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| | ||| | || Sbjct 14357 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCT 14416 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || |||| ||||||||| ||| | || ||||||||| Sbjct 14417 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 14476 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | ||||| |||| |||||||| Sbjct 14477 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 14536 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || |||||||||||||||||| Sbjct 14537 TTGCCTGTCAGGGTCTTCACAAAGATCTGCATC 14569 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| | ||| | || Sbjct 13673 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCT 13732 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || |||| ||||||||| ||| | || ||||||||| Sbjct 13733 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 13792 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||| | ||| | || | || | || | ||||| |||| ||||||||| Sbjct 13793 TGGATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTT 13852 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || |||||||||||||||||| Sbjct 13853 TTGCCTGTCAGGGTCTTCACAAAGATCTGCATC 13885 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| | ||| | || Sbjct 13901 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCT 13960 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || |||| ||||||||| ||| | || ||||||||| Sbjct 13961 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 14020 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||| | ||| | || | || | || | ||||| |||| ||||||||| Sbjct 14021 TGGATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTT 14080 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || |||||||||||||||||| Sbjct 14081 TTGCCTGTCAGGGTCTTCACAAAGATCTGCATC 14113 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| | ||| | || Sbjct 14129 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCT 14188 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || |||| ||||||||| ||| | || ||||||||| Sbjct 14189 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 14248 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||| | ||| | || | || | || | ||||| |||| ||||||||| Sbjct 14249 TGGATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTT 14308 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || |||||||||||||||||| Sbjct 14309 TTGCCTGTCAGGGTCTTCACAAAGATCTGCATC 14341 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||||||||| ||| | || Sbjct 14585 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 14644 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || | || ||||||||| ||| | || ||||||||| Sbjct 14645 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 14704 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | ||||| |||| |||||||| Sbjct 14705 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 14764 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 14765 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 14796 >seq1071 Length=588399 Score = 111 bits (122), Expect = 1e-19 Identities = 138/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 34204 CTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAG 34263 ||| ||||||||||||||||| ||| | || |||| |||||| || || || || || Sbjct 405706 CTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAGATTAG 405765 Query 34264 CCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTA 34322 || | ||||||| | ||| | || ||||||||| |||||| ||| | || | | Sbjct 405766 CCTCAGCTGGTCAGGGGGGTATGCCCTCCTTGTCCTAGATCTTTGCCTTGACATTCTCAA 405825 Query 34323 TCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGA 34382 | | || | | ||||| |||| |||||||| || ||||| || || |||||||||| Sbjct 405826 TGGTGTCCCTGGGCTCGACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGA 405885 Query 34383 TCTGCATC 34390 |||||||| Sbjct 405886 TCTGCATC 405893 >seq40 Length=4171579 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 2180047 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2179988 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||| |||||||||||| ||| | || |||||| || Sbjct 2179987 TCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 2179928 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | ||| || || | |||||||| Sbjct 2179927 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTC 2179868 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| || |||||||| Sbjct 2179867 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 2179836 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 2179819 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2179760 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||| |||||||||||| ||| | || ||| || || Sbjct 2179759 TCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCC 2179700 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || || | |||||||| Sbjct 2179699 TGGATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTC 2179640 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||| ||||| Sbjct 2179639 TTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 2179608 >seq370 Length=1552371 Score = 100 bits (110), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||||||| | || | || ||||| ||||||||||| ||||| ||| | || ||| Sbjct 218102 ACCAGGTGCAGGGTGCACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 218043 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGC 34299 | ||||||||| || || | |||| ||||| ||| | || | || ||||||||| Sbjct 218042 AGCTGCTTGCCAGCAAAGTTCAGCCTCTGCTTGTCAGGGGGTGATGCCCTCCTTGTCCTG 217983 Query 34300 TATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 |||||| ||||| || | || | || | | ||||| || | |||||||| || Sbjct 217982 GATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCGACCTCTAAGGTGATGGTCTT 217923 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | |||||||| ||||||||||| Sbjct 217922 ACCAGTTAAGGTTTTCACGAAGATCTGCAT 217893 >seq130 Length=2658597 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| || || |||||||| |||||||| || ||||| | | | || Sbjct 942302 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCAGCCATCC 942243 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || || | ||||||||| || | || ||||| || Sbjct 942242 TCCAGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATCT 942183 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 942182 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 942123 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 942122 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 942091 >seq97588 Length=222 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 17 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 76 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||| |||||||||||| ||| | || |||||| || Sbjct 77 TCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 136 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | ||| || || | |||||||| Sbjct 137 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTC 196 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGAT 34383 |||||||| || || ||||| || || Sbjct 197 TTGCCGGTCAGGGTCTTCACGAAAAT 222 >seq59 Length=3472997 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| || || |||||||| ||||||||||| ||||| || | || Sbjct 2114006 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGGGGCCATCC 2114065 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || || | ||| ||||| || | || ||||| || Sbjct 2114066 TCCAGCTGCTTGCCGGCAAATATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCCTTATCT 2114125 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | | | | ||||| || | |||||||| Sbjct 2114126 TGGATCTTGGCCTTGACATTCTCGATGGTGTGACTGGGCTCGACCTCAAGAGTGATGGTC 2114185 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 2114186 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2114217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322642220549120