Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq474 109 5e-19 seq1082 95.1 1e-14 >seq474 Length=1313924 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 || |||||||| ||| || | || ||||||||| | | | | ||| |||| | Sbjct 1043498 CTCTAAAAATCTGCATCCAGGGTGAAGACATTATCTGTGGTTTCCGCCATGACTGCAAAG 1043557 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| ||||| ||| ||||||||||||||||| |||||||| ||||| ||| Sbjct 1043558 CGCTGATACTCAGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTT 1043617 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||| ||||||| || Sbjct 1043618 TCCATAAAATCAAAGGGATTTTCTG 1043642 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 |||||||| || || | |||||||||||| || || |||||||| || |||| || || Sbjct 1049864 TCGTCCCTGCTGATCAGCTCGTTTGAAAACGTGAGTCCTGGCATGAGGCCTCTCTTCTTC 1049923 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| |||||||| ||||| || ||||| ||||| ||||| | ||||| || || Sbjct 1049924 AGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAACCGCCTTCTCCGGCGGCGAAGGCC 1049983 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 1049984 ACCACTCTCTCACC 1049997 >seq1082 Length=581247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 ||| ||||||||||||| |||| |||||||||| | |||| |||||||| || ||||| Sbjct 340953 ACTGTCTTTTCAAAGAAGCTTGTCTTTCCTTCTAGTAAAATGTTTTCCATGAAGTCAAAT 341012 Query 16019 GGATTTTTTGAACAAT-AGTAT-TTATCGCATCCCAATTCCAACAATAATCTATCCGCCA 16076 ||||||| | || | | || || | | | |||| |||| || | || || |||| Sbjct 341013 GGATTTTCT--ACTCTGAAAATCTTGTTGAACCCCAGATCCAGCATAAGCCTGTCTGCCA 341070 Query 16077 CAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGG 16131 | ||||| |||||||| |||| | |||||||| | || ||||| ||||| Sbjct 341071 CGAATTCAATATACTGCTTCACCAGGGTGCAGTTCATCCAGATGAATTTCACAGG 341125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461880948627200