Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq3 1139 0.0 seq1443 145 5e-30 seq330 107 1e-18 seq3620 84.2 2e-11 >seq3 Length=6666273 Score = 1139 bits (1262), Expect = 0.0 Identities = 1053/1326 (79%), Gaps = 11/1326 (1%) Strand=Plus/Plus Query 107314 TGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCT 107373 |||||||| | ||||| |||| | || || | ||||| |||||| | |||||| Sbjct 6281582 TGAAGATGATTTTGTGGAGGAAGG---TCTGTTGGCGCTATCATGTGTGGGTCATGGGCT 6281638 Query 107374 GCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGA-TGTA 107432 |||| |||||||||||| | || | |||| ||| ||||||||| | |||||||| | | Sbjct 6281639 GCTACATGCTGCTGGCCCTCATTGCCCTGAAACTGTCCCTCAGGCTGAAATGTGACTTCA 6281698 Query 107433 GATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTAC 107492 | ||| | |||||||| |||| ||| | | || ||| |||| ||||| | ||||| Sbjct 6281699 GTGTCC-TAGATCTGGACTCCAAGGAATCTCGAAGCCAGTACTGCAGGGATTTCCTGTAC 6281757 Query 107493 AATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGAC 107552 || | ||||||||||||||||||||| |||||||||||||||||| |||| |||||||| Sbjct 6281758 AAGAACCTGAAGCTGCCAGCAAAGAGGTCCATCAACTGTTCTGGGGTCACTCGAGGGGAG 6281817 Query 107553 CAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCT 107612 || | |||||| ||||||| || || | |||||||| | ||||| |||||| ||| Sbjct 6281818 CACAACGCAGTGATCCAGGCTCTGCTGAATAACCTGGAGATTAAGAAGAAGCGGCAGCCC 6281877 Query 107613 CTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGG 107672 |||| | || | ||||| | ||| || ||||||||||| |||||| || ||||| Sbjct 6281878 TTCACAGAGACTGACTACCTTAGCATGACAGCAGACTGTGAGCAATTCAAGACCAAAAGG 6281937 Query 107673 AAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATG 107732 |||||||||||||| | ||||| |||| |||| || ||||||||||| || || ||| Sbjct 6281938 AAGTTCATACAGTTATCGCTGAGCAAAGGAGAGGCTGATTTCCCCATTGCGTATTCCATG 6281997 Query 107733 GTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAG 107792 ||||| ||||||||||| || ||||||||| ||||||||||||| ||||| ||||| ||| Sbjct 6281998 GTGGTTCATGAGAAGATCGAGAACTTTGAAAGGCTGCTGCGAGCTGTGTACGCCCCCCAG 6282057 Query 107793 AACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAG 107852 ||||||||||||||||| ||||| |||||||| || || ||||| |||| |||| | Sbjct 6282058 AACATATACTGTGTCCATGTGGACCAAAAGTCCCCGGAAACCTTCAAGCAGGCAGTCAGG 6282117 Query 107853 GCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTAT 107912 ||||| | || |||||||| ||||||||||| || |||||| | || | || || ||| Sbjct 6282118 GCCATCACATCATGCTTCCCAAATGTCTTCATAGCTAGTAAGCTTGTGTCAGTAGTCTAT 6282177 Query 107913 GCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA 107972 || ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 6282178 GCTTCCTGGTCCAGGGTGCAGGCTGATCTGAACTGCATGGAAGACTTGCTCCAGAGCTCC 6282237 Query 107973 GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCC 108032 ||||||||||| ||| | |||||||| || ||||||||||| ||||| |||||||||||| Sbjct 6282238 GTGCCATGGAAATACCTCCTGAATACCTGTGGGACAGACTTTCCCATCAAGACCAATGCC 6282297 Query 108033 GAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCT 108092 |||||||||| |||||||||| | ||||| || |||||||||||||||| |||||||| Sbjct 6282298 GAGATGGTCCAGGCCCTCAAGCTATTGAATGGGCAGAACAGTATGGAGTCAGAGGTACCA 6282357 Query 108093 TCTGAGTCCaaaaaaaaT--CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACC 108150 | || || |||| | ||||||||||| | ||||||||||| ||||||| ||||| Sbjct 6282358 CC--GGTACATAAAACGTTCCGCTGGAAATATCACTATGAGGTGAAAGACACATTGTACG 6282415 Query 108151 CTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCT 108210 |||| |||| |||| |||||| || |||| | |||||||||| |||||||||| Sbjct 6282416 TAACCAATAAGAGGAAGACCCCTCCACCAAATAACATGACCATGTTCACTGGGAATGCCT 6282475 Query 108211 ATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC 108270 | | ||||| ||||||| ||| || ||||||| || ||||| | ||| |||| || Sbjct 6282476 ACATGGTGGCTTCTCGAGACTTCATCGAACATGTATTCAACAACTCCAAAGCCCAGCAAC 6282535 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 | |||||||||| |||||||||||||| || || || ||||| ||||||||||| |||| Sbjct 6282536 TAATTGAATGGGTAAAAGACACCTATAGTCCTGATGAGCACCTTTGGGCCACCCTCCAGC 6282595 Query 108331 GTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGA 108390 |||| ||||||||||||| || | ||| || |||| | | || |||||||||||| Sbjct 6282596 GTGCCTCGTGGATGCCTGGATCAGCTCCCTTGCATGCCAAATTTGACCTCTCAGACATGA 6282655 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGA-TGTCAGCATGGGGGCG 108449 | | || || ||||| ||||||||||| ||||||||| || | || || |||||| Sbjct 6282656 CGTCTATTGCAAGGCTAATCAAGTGGCAGGGCCACGAGGGGGACATTGAGGAT-GGGGCG 6282714 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 ||||| | || ||||| || |||| | | |||| |||| || |||||| | |||||| Sbjct 6282715 CCTTACACCCCTTGCTCAGGCGTCCACCAGCGGGCTGTCTGTATCTACGGGTCTGGGGAC 6282774 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGAT 108569 ||| ||||| | || ||||||||||| |||||||| |||||||||||||| | ||||||| Sbjct 6282775 CTGCACTGGCTACTTCAGAACCATCATCTCTTGGCCAACAAGTTTGACCCAAAGGTGGAT 6282834 Query 108570 GATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAA 108629 ||||||||||| ||||| |||||||| || |||||||| || |||||||||||||| ||| Sbjct 6282835 GATAACGTCCTTCAGTGTTTAGAAGAATATCTACGTCACAAAGCCATCTATGGGACCGAA 6282894 Query 108630 CTTTGA 108635 || ||| Sbjct 6282895 CTGTGA 6282900 >seq1443 Length=385661 Score = 145 bits (160), Expect = 5e-30 Identities = 240/343 (70%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||||||| ||||||| || ||||| || || || ||||| || | ||| Sbjct 89076 CCCCTCAGCAAAGAAGAGGTAGACTTTCCAATTGCGTATTCCATAGTGGTTCACCACAAG 89135 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | ||||| || Sbjct 89136 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATC 89195 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || ||| | || || ||||| | || |||| |||||| Sbjct 89196 CACGTGGACAAAAAAGCCGAGGAGCCCTTTTTAGCCGCGGTGATGGGCATTGCATCCTGC 89255 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || || |||||| ||||||| || ||| || |||||||| || ||| | Sbjct 89256 TTTGGTAACGTCTTCGTGGCCAGCCAGCTGGAGAATGTTGTTTATGCATCTTGGAGTCGG 89315 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| |||||||| ||||||||| | ||| || | ||| | | |||| | ||||||| Sbjct 89316 GTGCAGGCTGACCTCAACTGTATGAAGGACCTG-TACAG-GATGAGTGAAAGCTGGAAGT 89373 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 |||| | ||| || || | || ||||| || || ||||| Sbjct 89374 ACTTGATCAATCTTTGTGGTATGGATTTCCCTATCAAAACCAA 89416 >seq330 Length=1647376 Score = 107 bits (118), Expect = 1e-18 Identities = 181/254 (71%), Gaps = 16/254 (6%) Strand=Plus/Minus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| ||||| | || ||||| || |||||| |||| | ||||||| ||||||| Sbjct 30069 ATGCCCC--AGAACGTCTATTGTGTGCATGTGGATAGGAAGGCAACAGAGACCTTCAAAG 30012 Query 107842 AGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 | || ||| || | ||| | ||| |||||||||| ||| ||||| |||| ||| Sbjct 30011 ATGCTGTCCAG-CAGTTACTAAGCTGTTTCCCCAATGCTTTCCTGGCCTCTAAGATGGAG 29953 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 || ||||| |||| || ||| | | || |||||||||||||| ||| |||| || Sbjct 29952 CCTGTGGTCTATGGTGGCTTCTCCCGCCTCCAGGCTGACCTGAACTGCATGAAAGATCTG 29893 Query 107961 -----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACA-GACTTC 108014 |||| ||| || || ||||| || | || || || ||| ||||| |||||| Sbjct 29892 GTGGCCTCC-GAG----GTCCCCTGGAAATATGTCCTCAACACCTGC-GGACAGGACTTC 29839 Query 108015 CCCATAAAGACCAA 108028 ||| | || ||||| Sbjct 29838 CCCCTGAAAACCAA 29825 >seq3620 Length=78343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 225/336 (67%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGA-TTGAAAAC 107756 |||||||| | ||||||| | |||||| ||||| |||| | ||| || || || Sbjct 49508 AAGAAGAGGCTGCCTTCCCCCTGGCCTACGTTATGGTTATCCACAA--AGACTTCAACAC 49451 Query 107757 -TTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTG 107813 |||||| |||| | | ||| | || |||||| |||| | ||||| || |||||| Sbjct 49450 CTTTGAAAGGCTCTTCAGGGCCATTTACATGCCCC--AGAATGTCTACTGCGTGCACGTG 49393 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCC-TGCTTCCC 107872 |||| || |||| | || || |||| |||||| ||| ||| | | |||||||| Sbjct 49392 GATGAAAAAGCCCCCGGGAAGTTTAAAGGGGCGGTGT-GGCAGTTACTGCAGTGCTTCCC 49334 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 || | || |||| ||||| |||||| |||| || ||| | | || Sbjct 49333 GAACGCTTTTCTGGCTTCTAAGTCTAAGAAGGTGGTCTATGGTGGCTTCTCCCGCCTCCA 49274 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACT 107992 |||||||||||||| ||| |||| || | | | || || ||||| || | || Sbjct 49273 GGCTGACCTGAACTGCATGAAAGATCTGTTGGCCTCCCCGGTCCCCTGGAAATATGTCCT 49214 Query 107993 GAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || |||||| ||||||||| | || ||||| Sbjct 49213 TAACACCTGCGGGCAGGACTTCCCCCTCAAAACCAA 49178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347805501498048