Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq786 253 2e-62 >seq786 Length=828056 Score = 253 bits (280), Expect = 2e-62 Identities = 538/800 (67%), Gaps = 6/800 (1%) Strand=Plus/Plus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 |||| || || ||||| || || || || || | ||||| | ||| | ||| ||||| Sbjct 609987 GATCACACAGGCACTGGCACCTTGTCGGTGTTCAGCATGCAGGCACGACACAACCTGAGA 610046 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 ||||||||| | | || || ||| | || || ||||| || ||| |||||||||| Sbjct 610047 GGTGAATTTCCTCTGCTCACAACCAAATGAGTGTTCTGGAAGGGAGTTTTTGAAGAGTTG 610106 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| ||||| || |||||| || | || | ||||| | || Sbjct 610107 CTGTGGTTTATCAAAGGCTCCACAAATGGTAAGCAACTGTCCTCCGAGGGAGTGAGAATA 610166 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATT---TGACAACCGTCAA 20214 ||| || |||| || | |||| ||||| ||||| || || | || Sbjct 610167 TGGGATGCCAATGGGTCCCTAGATTTTTCGGACAGCCTGGGATTCTCTG-CAT--GACAG 610223 Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274 || |||| |||| || || ||||| || | ||||||||||||||||| || || Sbjct 610224 GAATGGGACCTGGGCCCGGTTTATGGTTTCTAGTGGAGACATTTTGGAGCAGACTACAAA 610283 Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTA 20334 |||| | || |||| | || ||||||||||| || | ||||| || ||| | Sbjct 610284 GACAGAGATTCAGATTACTCGGGCCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACC 610343 Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTG 20394 || ||||| ||||| | ||||||| | | | |||| ||||||||| | ||||| | Sbjct 610344 ATCAAAACCAACCCTGATGACAGAATATTAACCATATGTGCCTGGAACCCAAAAGACCTT 610403 Query 20395 CCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAA 20454 || | ||||| ||||||| || ||| || || ||||| || || | ||| || Sbjct 610404 CCCCTGATGGCAATGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTAAATGGGGAG 610463 Query 20455 TTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATT 20514 |||| || ||| | || || | || | |||||||| |||||||| || ||||| ||| Sbjct 610464 CTGTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGCCTGGGTGTGCCCTTCAACATT 610523 Query 20515 GCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGAC 20574 || ||||||| |||||||| | ||||||||||| | |||| | || | ||||| Sbjct 610524 GCCTGTTATGCCCTGCTTACCTCCATGATTGCACACATCACAGGCCTGAAGCCAGGTGAT 610583 Query 20575 TTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTA 20634 || ||||| || | ||| | || | |||||| || |||||||| || || | | | | Sbjct 610584 TTTGTCCATACTTTGGGAAATGCACGTATTTATCTGAATCATATCGAGCCACTGAGAATT 610643 Query 20635 CAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGAT 20694 ||| | ||| |||||| || | ||||| || || || || ||| | Sbjct 610644 CAGCTTCAGCGAGAACCAAGACCTTCCCCAAAGCTCAAAATCCTTCAAAAAGTTGAGACA 610703 Query 20695 ATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATT 20754 ||| | ||||| |||| ||| || ||| | | |||||||||||||| ||| | ||| Sbjct 610704 ATTGATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGTTATAATCCACATCCAACGATT 610763 Query 20755 CCAATGGAAATGTCTGTTTA 20774 |||| ||||| |||||| Sbjct 610764 AAAATGAAAATGGTTGTTTA 610783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398652969516640