Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1045 143 2e-29 seq1071 107 2e-18 seq40 105 5e-18 seq59 104 2e-17 seq130 95.1 1e-14 seq370 91.5 1e-13 >seq1045 Length=604390 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 14588 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 14647 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || ||||||| ||| ||||| || || | |||||||||||| Sbjct 14648 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14707 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 14708 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 14767 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 14768 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14796 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||||||| ||| |||| | || ||| Sbjct 14360 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 14419 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| || ||| ||||| || || | |||||||||||| Sbjct 14420 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14479 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 14480 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 14539 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 14540 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14568 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||||||| ||| |||| | || ||| Sbjct 13676 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 13735 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| || ||| ||||| || || | |||||||||||| Sbjct 13736 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 13795 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || | ||| || | | | | |||| | ||| ||||||| ||| || || ||| Sbjct 13796 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 13855 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 13856 CCTGTCAGGGTCTTCACAAAGATCTGCAT 13884 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||||||| ||| |||| | || ||| Sbjct 13904 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 13963 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| || ||| ||||| || || | |||||||||||| Sbjct 13964 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14023 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || | ||| || | | | | |||| | ||| ||||||| ||| || || ||| Sbjct 14024 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 14083 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 14084 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14112 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||||||| ||| |||| | || ||| Sbjct 14132 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 14191 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| || ||| ||||| || || | |||||||||||| Sbjct 14192 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14251 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || | ||| || | | | | |||| | ||| ||||||| ||| || || ||| Sbjct 14252 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 14311 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 14312 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14340 >seq1071 Length=588399 Score = 107 bits (118), Expect = 2e-18 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||| | ||| ||||| | |||||||||||| ||| ||| | || ||| Sbjct 405686 ACCAGGTGCCGGGTGGACTCCT---GGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 405742 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTC-GGGAGGCACACCCTCCTTGTCCGC 45246 || || || ||||| || || | || | | ||||| ||| || | |||||||||||| Sbjct 405743 AGCTGCTTACCGGCAAAGATTAGCCTCAGCTGGTCAGGGGGGTATGCCCTCCTTGTCCTA 405802 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || ||| ||| || | | | | |||||| ||| ||||||| ||| || ||||| Sbjct 405803 GATCTTTGCCTTGACATTCTCAATGGTGTCCCTGGGCTCGACCTCCAGGGTGATGGTCTT 405862 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 405863 ACCGGTCAGGGTCTTCACAAAGATCTGCAT 405892 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| || ||||||||| | | || | || ||| Sbjct 405912 ACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGACTGGGTGCAGCCATCTTCC 405971 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || |||| || ||| ||||| || || | |||||||||||| Sbjct 405972 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 406031 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||| ||||| | | | || |||| Sbjct 406032 ATCTTTGCCTTGACACTCTCAATGGTGTCACTGGGCTCGACCTCTAGGTTGATGATCTTA 406091 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | || |||| ||||| ||||| Sbjct 406092 CCAGTTAAGGTTTTCAGGAAGATCTGCAT 406120 >seq40 Length=4171579 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||||| || || ||| | || ||| Sbjct 2179816 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2179757 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| |||||||| || | ||||| || ||| Sbjct 2179756 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 2179697 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || |||||| Sbjct 2179696 ATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTG 2179637 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| |||||||| ||||||||||| ||| Sbjct 2179636 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 2179604 >seq59 Length=3472997 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| ||||| ||||||||||| ||| | | | || ||| Sbjct 2114009 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGGGGCCATCCTCC 2114068 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| ||||||| | ||||||||| || || | || ||||| || Sbjct 2114069 AGCTGCTTGCCGGCAAATATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGG 2114128 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| | ||| ||||| | || || |||||| Sbjct 2114129 ATCTTGGCCTTGACATTCTCGATGGTGTGACTGGGCTCGACCTCAAGAGTGATGGTCTTG 2114188 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| |||||||||||||| |||||||| Sbjct 2114189 CCCGTCAGGGTCTTCACAAAGATCTGCATGTT 2114220 >seq130 Length=2658597 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| ||||| |||||||| || ||| || | || ||| Sbjct 942299 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCAGCCATCCTCC 942240 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| ||||||| | ||| ||||| | || | || ||||| || Sbjct 942239 AGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATCTTGG 942180 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 942179 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 942120 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| |||||||||||||| |||||||| Sbjct 942119 CCCGTCAGGGTCTTCACAAAGATCTGCATGTT 942088 >seq370 Length=1552371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| |||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 218102 ACCAGGTGCAGGGTGCACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 218043 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTC-GGGAGGCACACCCTCCTTGTCCGC 45246 || || || || || || ||| || ||| | ||| ||| | | |||||||||||| Sbjct 218042 AGCTGCTTGCCAGCAAAGTTCAGCCTCTGCTTGTCAGGGGGTGATGCCCTCCTTGTCCTG 217983 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || ||| ||| || | | | | |||| | ||| ||||| | ||| || ||||| Sbjct 217982 GATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCGACCTCTAAGGTGATGGTCTT 217923 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | || ||||| ||||| ||||| Sbjct 217922 ACCAGTTAAGGTTTTCACGAAGATCTGCAT 217893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394549635412192