Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1138 93.3 8e-14 >seq1138 Length=537340 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| ||||||||||| || || || |||||||| |||| | || ||||| || |||| Sbjct 332868 TTGTGGCCTTTGCTGCCGTGGAGGGGATCTTCTTCTCTGGTTCTTTTGCATCAATATTCT 332809 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| |||| | |||| || ||||||| ||||||||| ||||| || | Sbjct 332808 GGCTCAAGAAGCGGGGACTGATGCCCGGCCTCACCTTTTCCAATGAGCTCATTAGCAGAG 332749 Query 102036 ACGA 102039 |||| Sbjct 332748 ACGA 332745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988200056880160