Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10632 134 2e-26 seq1179 134 2e-26 seq1138 111 2e-19 seq63 102 1e-16 seq474 93.3 5e-14 >seq10632 Length=3166 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 1723 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 1664 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1663 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1604 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 1603 CTGTTTCTTACACCATA 1587 >seq1179 Length=509559 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 478449 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 478390 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 478389 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 478330 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 478329 CTGTTTCTTACACCATA 478313 Score = 109 bits (120), Expect = 7e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 ||||||| ||||| || || | || || ||||| | ||| || || || || || || | Sbjct 474950 CATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 474891 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||| | |||||| | || ||||| ||||| |||||||||| Sbjct 474890 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTCTCAAATGGAT 474831 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || || || || || |||| ||||| || ||||| || || || | ||| | Sbjct 474830 ATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 474771 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 474770 GTTTATTTGA 474761 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 482006 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 481947 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || |||||||||||||| || || || || || ||||| || | || |||| Sbjct 481946 TTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGACAGTCT 481887 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTT 62269 |||| | |||||||| | ||| ||||| | | |||| Sbjct 481886 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTT 481850 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 |||||| ||||| |||||||| ||||||||||| || | || ||||| | | || || Sbjct 471856 CACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTG 471797 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||| || |||||||| || || || | || |||||| | | || || | ||||| || Sbjct 471796 TTCTTCCTTTCCTGTGTTTTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGG 471737 Query 63386 TTCCAAGTATATGGC 63400 |||| ||| || || Sbjct 471736 CTCCAGGTAAATAGC 471722 >seq1138 Length=537340 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | || || ||||| ||||| |||||||| || || ||||| | Sbjct 332743 CCTCGTCTCTGCTAATGAGCTCATTGGAAAAGGTGAGGCCGGGCATCAGTCCCCGCTTCT 332802 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || || |||||||| || || || |||||||||| Sbjct 332803 TGAGCCAGAATATTGATGCAAAAGAACCAGAGAAGAAGATCCCCTCCACGGCAGCAAAGG 332862 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 332863 CCACAACGCGCTCTCC 332878 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTCCCATTT 33291 ||| ||||| |||| || | |||| ||| ||| |||| ||||| || ||||| Sbjct 330849 TTAGAAGTCCGCATCCAAGGTAAAAGAATTCTCTG-TTGAATTCGACATCACCCCCATCC 330907 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || ||||| ||||| || || || || || || || |||||||| | ||| || |||| Sbjct 330908 TCTGATATTCCCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATGTTTT 330967 Query 33352 CCATGAAATCAAACGGATT 33370 ||||||| ||||| ||||| Sbjct 330968 CCATGAAGTCAAATGGATT 330986 >seq63 Length=3375784 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | ||| | ||||||||||| ||| ||||||||| ||| Sbjct 873216 GTTACTTTCTATGATGTGTACCTGGTTCTGCAAGCTTTCATACTGAGTACTGCAGTCTTT 873157 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||| | | ||||||||| || |||||||| ||||| ||| ||| | |||| Sbjct 873156 CTTGGCTTGACTGCCTATACTCTACAGTCGAAGAGAGACTTCAGCAAATTTGGAGCAGG 873098 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 188376 TCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATC 188435 |||||||| | ||||||||||| || || |||||||||||||| || ||||| ||||| | Sbjct 878905 TCGGATCTCTGGGCTTGATTTTTGCGTTAACTTTACACAGACACAAGCATCCTCTGAACC 878846 Query 188436 TGTACCTACTTTGTG 188450 | ||||| |||| || Sbjct 878845 TCTACCTGCTTTTTG 878831 >seq474 Length=1313924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| || || || | ||||| |||||||||||||| ||||| ||||| | ||| | Sbjct 1049862 CCTCGTCCCTGCTGATCAGCTCGTTTGAAAACGTGAGTCCTGGCATGAGGCCTCTCTTCT 1049921 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| | ||| || || || || ||||| |||||| | || || |||| Sbjct 1049922 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAACCGCCTTCTCCGGCGGCGAAGG 1049981 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 1049982 CCACCACTCTCTCACC 1049997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628958276866560