Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq786 206 2e-48 seq2476 125 6e-24 >seq786 Length=828056 Score = 206 bits (228), Expect = 2e-48 Identities = 427/627 (68%), Gaps = 10/627 (2%) Strand=Plus/Minus Query 20961 CCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTC 21020 ||||| || || ||||| || || || ||||||| |||| ||| || |||| | || Sbjct 610600 CCCAAAGTATGGACAAAATCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGGAGGTA 610541 Query 21021 AGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGG 21080 || ||||| || | ||| ||||| || || || || |||||||| || | ||||||||| Sbjct 610540 AGCAGGGCATAACAGGCAATGTTGAAGGGCACACCCAGGCCCATATCTCCTGACCTCTGG 610481 Query 21081 TACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGA 21140 || || ||||| ||||||||||| |||| || || ||||| | | || |||||| Sbjct 610480 TAAAGTTGGCAAGACAGCTCCCCATTTACCACATAGAATTGACAGAGGGCATGGCAAGGA 610421 Query 21141 GGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATA---ACGATGCGCCGA 21197 || | |||||| | | ||||| |||||||| || || || | || | | Sbjct 610420 GGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCCAGGCACATATGGTTAATATTCTGTCA 610361 Query 21198 TCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCC 21257 || ||| | | || || || | ||| | |||||||||| || || || ||| Sbjct 610360 TCA--GGGTTGGTT-TTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGGCCC 610304 Query 21258 TCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTAC 21317 ||| | | || | |||| || || |||||||||||||||| ||| || || Sbjct 610303 GAGTAATCTGAATCTCTGTCTTTGTAGTCTGCTCCAAAATGTCTCCACTAGAAACCATAA 610244 Query 21318 ACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCG 21376 ||||| ||||| || | || | | | ||| ||| | || | || |||| | | Sbjct 610243 ACCGGGCCCAGGTCCCATTCCTGTCATGCAGAGAATCCCAG-GCTGTCCGAAAAATCTAG 610185 Query 21377 GGACCCGTGCGCGTCCCAAATTTTTACGCCG-CGGCGCGACAGTTCGGTGGAGTCGGTGG 21435 |||||| | || ||||| ||| | || || ||| | ||||||| | | |||| Sbjct 610184 GGACCCATTGGCATCCCATATTCTCACTCCCTCGGAG-GACAGTTGCTTACCATTTGTGG 610126 Query 21436 AGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGG 21495 |||| ||||||||||||||||||| || | || ||| |||| ||||| | |||||| | Sbjct 610125 AGCCTTTGATAAACCACAGCAACTCTTCAAAAACTCCCTTCCAGAACACTCATTTGGTTG 610066 Query 21496 TTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGG 21555 | | ||||||||| || | || ||||| | ||| ||||| | | |||||| ||| || Sbjct 610065 TGAGCAGAGGAAATTCACCTCTCAGGTTGTGTCGTGCCTGCATGCTGAACACCGACAAGG 610006 Query 21556 TGCCCACGCCCGTCCTGTCCTCCCTCT 21582 |||| ||| || |||||| ||| Sbjct 610005 TGCCAGTGCCTGTGTGATCCTCCTTCT 609979 >seq2476 Length=158986 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| || || || ||||| |||||||| ||||| || | Sbjct 45751 TCAGGCCCGTGATGTGTGCTATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGG 45692 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || |||||||| || | ||||||||||| || ||||| ||||||||||| Sbjct 45691 GCACACCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTT 45632 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || || ||||| | | || |||||||| || |||||| Sbjct 45631 CCACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 45588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427206933864960