Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10632 122 1e-22 seq1179 122 1e-22 seq474 114 2e-20 seq2743 93.3 6e-14 >seq10632 Length=3166 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 1723 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 1664 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 1663 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1604 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 1603 CTGTTTCTTACACCATA 1587 >seq1179 Length=509559 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 478449 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 478390 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 478389 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 478330 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 478329 CTGTTTCTTACACCATA 478313 Score = 113 bits (124), Expect = 6e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || |||||||| | Sbjct 482006 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 481947 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || |||||||||||||| || || || || || ||||| || | || |||| Sbjct 481946 TTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGACAGTCT 481887 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 78941 |||| | |||||||| | ||| ||||| | | |||| Sbjct 481886 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTT 481850 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||| ||||| || || | || | ||||| ||||| || || || || ||||| ||| Sbjct 474948 TATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCATAA 474889 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||| ||||| || || | |||||| | || |||||| |||| ||||||||||| Sbjct 474888 TAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTCTCAAATGGATAT 474829 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 474828 CTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGCGT 474769 Query 79480 TTATTAGA 79487 ||||| || Sbjct 474768 TTATTTGA 474761 >seq474 Length=1313924 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||| || || || || ||||| |||||||||||||| ||||| ||||| | ||| | Sbjct 1049862 CCTCGTCCCTGCTGATCAGCTCGTTTGAAAACGTGAGTCCTGGCATGAGGCCTCTCTTCT 1049921 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| | ||||| |||||||| ||||| |||||| | ||||| |||| Sbjct 1049922 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAACCGCCTTCTCCGGCGGCGAAGG 1049981 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 1049982 CCACCACTCTCTCACC 1049997 >seq2743 Length=135121 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||||| |||||| || ||| || ||||||| ||||| |||||| ||||| || || Sbjct 78747 TGTTTGGACATCAGGCAGCTGAAGTCACAGTGCAAACCCTAGTCTCTGCTAATAAGCTCT 78688 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||||| || | | |||||| || || | || || ||||| || | || || Sbjct 78687 TTGGAAAATCTGCGGCTGGGCATCAGTCCTTGTTTCTTGAGCCAGAACACTGATATGAAA 78628 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA 50120 || |||||||||||||||||| || | ||||| || |||| |||||||| Sbjct 78627 GAACCAGAAAAGAAGATTCCTCTCACAGTGGCAAGAGCTACAATATGTTCTCCATA 78572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717288794049280