Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10632 129 8e-25 seq1179 129 8e-25 seq474 96.9 5e-15 seq1138 89.7 7e-13 >seq10632 Length=3166 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 1723 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 1664 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 1663 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1604 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 1603 CTGTTTCTTACACCAT 1588 >seq1179 Length=509559 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 478449 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 478390 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 478389 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 478330 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 478329 CTGTTTCTTACACCAT 478314 Score = 113 bits (124), Expect = 6e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| |||| || || || || || | Sbjct 482006 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 481947 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| |||||||||||||| || || || || || ||||| || | || |||| Sbjct 481946 TTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGACAGTCT 481887 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 71024 |||| | |||||||| | ||| ||||| | | |||| Sbjct 481886 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTT 481850 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 ||||||| || || || || | | | |||||| ||||| || || || || ||||||| Sbjct 474950 CATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 474891 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || || | |||||| | || ||||| ||||| |||||||||| Sbjct 474890 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTCTCAAATGGAT 474831 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || || || || ||||||| ||||| || ||||| || || || | || | Sbjct 474830 ATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 474771 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 474770 GTTTATTTGA 474761 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || |||| ||| | || | || || ||||| || | |||||||| || || |||||| Sbjct 466896 CTGGACAGTTGTGGGCGGTTGGTCCCAGCATTGAACAGAGTAGGAGAGGCATGAGTAAAC 466837 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || ||||| || || ||||| || ||||| || | || ||||| || || || Sbjct 466836 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATTGCAGCATCGATATCTTCTTTGTGAATC 466777 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| ||||||||||| ||||||||| Sbjct 466776 CCCACAGACACCCTCATCAACATATGCTGTGGTCTTTCA 466738 >seq474 Length=1313924 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| || || || || | ||||| |||||||||||||| ||||| ||||| | ||| | Sbjct 1049862 CCTCGTCCCTGCTGATCAGCTCGTTTGAAAACGTGAGTCCTGGCATGAGGCCTCTCTTCT 1049921 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||||| ||||| || ||||| ||||| |||||| | || || |||| Sbjct 1049922 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAACCGCCTTCTCCGGCGGCGAAGG 1049981 Query 42207 CAATAAGTCTCTCTCC 42222 | | | |||||| || Sbjct 1049982 CCACCACTCTCTCACC 1049997 >seq1138 Length=537340 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/139 (75%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTCCCATTT 41774 ||| ||||| |||| || | |||| ||| ||| |||| ||||| || ||||| Sbjct 330849 TTAGAAGTCCGCATCCAAGGTAAAAGAATTCTCTG-TTGAATTCGACATCACCCCCATCC 330907 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || ||||| ||||| || || || || || || ||||||||||| | ||| || |||| Sbjct 330908 TCTGATATTCCCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATGTTTT 330967 Query 41835 CCATGAAATCAAACGGATT 41853 ||||||| ||||| ||||| Sbjct 330968 CCATGAAGTCAAATGGATT 330986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670223497675520