Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq40 89.7 4e-13 seq302 87.8 1e-12 seq1824 82.4 6e-11 >seq40 Length=4171579 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || ||||||||||| ||| | | | ||||| | || Sbjct 2179810 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 2179751 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | || || |||||| || || || ||||| || || ||| Sbjct 2179750 TTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTG 2179691 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| ||||| || || || || |||| ||| ||||| || || ||| Sbjct 2179690 GCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTC 2179631 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || || || || |||||||| ||||| Sbjct 2179630 AGGGTCTTCACGAAGATTTGCAT-TTTGA 2179603 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || ||||||||||| ||| | | | ||||| | || Sbjct 2180038 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 2179979 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | || || |||||| || || || || || || || ||| Sbjct 2179978 TTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTG 2179919 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || || ||| || |||| ||| ||||| || || ||| Sbjct 2179918 GCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTGCCGGTC 2179859 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| Sbjct 2179858 AGGGTCTTCACGAAAATCTGCAT 2179836 >seq302 Length=1732574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||||||||| || ||||| ||||||||||| | | | | | Sbjct 218480 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAATC----AAAGTACAGCC 218425 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| || ||||| | |||| | || ||||| ||||||||||| || Sbjct 218424 ATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTT 218365 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| ||||||| ||||||| || || ||| || || | | || Sbjct 218364 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGATCATGAT 218305 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||||| || || || || || || ||||| ||||| || Sbjct 218304 GGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCTT 218266 >seq1824 Length=278459 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||||||||| || ||||| |||||||| || || | | || Sbjct 166971 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA-----AAGTATGGC 167025 Query 15208 G-TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 ||||| | ||| || ||||| | | || | |||||||| ||||||||||| | Sbjct 167026 CATCTTCCAGTTGCTTACCAGCAAAGACCAGTCTCTGTTGGTCAGGAGGAATTCCTTCCT 167085 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 | | || ||| ||||||| ||||||| || || ||| || || | || | Sbjct 167086 TATTCTGCATCTTGGCCTTTACATTTTCTATAGTGTCAGAGGGTTCAACCTCGAGCGTGA 167145 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||||| ||||| || || || || ||||| ||||| || Sbjct 167146 CGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCATCTT 167185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361697396632032