Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq474 93.3 4e-14 >seq474 Length=1313924 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 12970 TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCAT 13029 ||||| | |||||||||||| |||||||| || ||||||||||| ||| |||||||||| Sbjct 1044435 TTCTACAAGCAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCAT 1044494 Query 13030 TCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 ||| || | ||||||| ||||||||||| || Sbjct 1044495 TCCAATGAGGCCGACAGGCAAGGCTTCTGTTAAGAA 1044530 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| || ||||| || |||||||| |||||||||||||| |||||| Sbjct 1043561 TGATACTCAGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTCC 1043620 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 1043621 ATAAAATCAAAGGGATTTT 1043639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430409068423104