Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2912 138 3e-27 seq370 138 3e-27 seq40 138 3e-27 seq1071 132 1e-25 seq420 132 1e-25 seq1824 127 5e-24 seq302 127 5e-24 seq1255 111 4e-19 seq474 104 5e-17 seq1133 84.2 5e-11 >seq2912 Length=120370 Score = 138 bits (152), Expect = 3e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 104378 ATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTC 104437 || || |||||||| | ||| | | ||||| |||| | || ||||| || |||||| Sbjct 71324 ATGTTGTAGTCAGACAAAGTACGGTCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTC 71383 Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 ||||| |||||||| |||||||| |||||||| ||||| || ||||||||||||| ||| Sbjct 71384 TGTTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGTG 71443 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || ||||| |||| |||||||| || || || |||| || || | || |||||| Sbjct 71444 TCCGAGGGTTCATCCTCGAGTGTAATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGC 71503 Query 104558 ATTTTG 104563 || ||| Sbjct 71504 ATCTTG 71509 >seq370 Length=1552371 Score = 138 bits (152), Expect = 3e-27 Identities = 147/193 (76%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || |||||||| || || | || ||||| || || || |||||||| Sbjct 218084 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 218025 Query 104429 ATTAGCCTCTGTTGATCAGGAGGT-ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 | |||||||| | ||||| ||| || || || || ||||| |||||||| |||||||| Sbjct 218024 TTCAGCCTCTGCTTGTCAGGGGGTGATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATT 217965 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||| || || || || ||||||| || || ||||||||||| | ||||| || Sbjct 217964 CTCAATGGTGTCACTGGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTCAC 217905 Query 104548 AAATATCTGCATT 104560 || ||||||||| Sbjct 217904 GAAGATCTGCATT 217892 >seq40 Length=4171579 Score = 138 bits (152), Expect = 3e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || || ||| Sbjct 2179837 ATGCCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCA 2179778 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || || | ||| || || || Sbjct 2179777 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGG 2179718 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||||||||| ||||| || || |||||||| | ||| || || || || Sbjct 2179717 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCC 2179658 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||||||| || || ||||| || || || || || || || || ||||||||| Sbjct 2179657 ACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 2179604 >seq1071 Length=588399 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| || | || | || ||||| || || |||||| Sbjct 405924 GTGGACTCCTTCTGGATATTGTAGTCGGACTGGGTGCAGCCATCTTCCAGCTGCTTTCCA 405983 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || || || || ||||| |||||||| || Sbjct 405984 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 406043 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||| | || | ||| || || || || |||||||| | || |||||||||| | ||| Sbjct 406044 ACACTCTCAATGGTGTCACTGGGCTCGACCTCTAGGTTGATGATCTTACCAGTTAAGGTT 406103 Query 104543 TTTACAAATATCTGCATT 104560 || | || ||||||||| Sbjct 406104 TTCAGGAAGATCTGCATT 406121 >seq420 Length=1427458 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || || || || |||||||| | ||| || ||||| Sbjct 1349686 ACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGGCCATCTTCC 1349745 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || |||||||| | ||||| || |||||||| |||| ||| Sbjct 1349746 AGTTGCTTACCAGCAAAGATCAGCCTCTGCCGGTCAGGGGGAATTCCTTCCTTATTCTGG 1349805 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| ||||| | || || || || Sbjct 1349806 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGATCGTGATGGTTTTC 1349865 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || | || |||||||| ||| Sbjct 1349866 CCCGTAAGGGTCTTCATGAAAATCTGCATCTTG 1349898 >seq1824 Length=278459 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || || || || |||||| | || || ||||| Sbjct 166978 ACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAAA----GTATGGCCATCTTCC 167033 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| | || |||||||| |||||||| |||||||| |||| ||| Sbjct 167034 AGTTGCTTACCAGCAAAGACCAGTCTCTGTTGGTCAGGAGGAATTCCTTCCTTATTCTGC 167093 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| ||||| || || | || || Sbjct 167094 ATCTTGGCCTTTACATTTTCTATAGTGTCAGAGGGTTCAACCTCGAGCGTGACGGTTTTT 167153 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || || |||||||| ||| Sbjct 167154 CCTGTAAGGGTCTTCACGAAAATCTGCATCTTG 167186 >seq302 Length=1732574 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || || || || || ||| | || | || ||||| Sbjct 218473 ACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAATCAAA----GTACAGCCATCTTCC 218418 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || |||||||| || |||||||| |||||||| |||||||| Sbjct 218417 AGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 218358 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| || || | | || || || Sbjct 218357 ATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGATCATGATGGTTTTC 218298 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || || |||||||| ||| Sbjct 218297 CCCGTAAGGGTCTTCACGAAAATCTGCATCTTG 218265 >seq1255 Length=466764 Score = 111 bits (122), Expect = 4e-19 Identities = 144/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || || || || || || ||||| || | ||| || |||| ||||| || ||||| Sbjct 71539 GACTCCTTTTGGATGTTGTAGTC-GACAAAGTATGGCCACCTTCCAGTTGCTTACCAGCG 71597 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || ||||||||||| || |||||||| |||||||| ||| ||| ||||| || |||| | Sbjct 71598 AAGATTAGCCTCTGCTGGTCAGGAGGAATTCCTTCCATATGCTGGATCTTGGCCTTTAGA 71657 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 ||||||| || || ||||| ||||| ||||| || | || || | ||| || || Sbjct 71658 TTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGCTTTCCCTGAAAGGGTCTTC 71717 Query 104546 ACAAATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 71718 TTGAAAATCTGCATCTTG 71735 >seq474 Length=1313924 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || || ||||| | |||||| ||||| || ||||| ||||| ||||| || ||| Sbjct 1049985 GTGGCCTTCGCCGCCGGAGAAGGCGGTTTCTTCTCTGGGTCGTTTGCTGCTATATTCTGG 1049926 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| ||||||||| | || || || ||||| |||| ||||||||| Sbjct 1049925 CTGAAGAAGAGAGGCCTCATGCCAGGACTCACGTTTTCAAACGAGCTGATCAGCAGGGAC 1049866 Query 269258 GA 269259 || Sbjct 1049865 GA 1049864 >seq1133 Length=540973 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 104425 AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 ||| || |||||||| || ||||| ||||| | ||||||||||| ||||| || || || Sbjct 342563 AAAGATGAGCCTCTGCTGGTCAGGGGGTATGTCCTCTTTATCCTGGATCTTGGCCTTCAC 342504 Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544 ||| || ||| || || || || |||||||| || || ||||| | || || || Sbjct 342503 ATTCTCAGTGGTGTCACTGGGCTCCACCTCTAGGGTGATTGTCTTTTGGATCAGAGTCTT 342444 Query 104545 TACAAATATCTGCATTTTG 104563 | || || ||||||||| Sbjct 342443 CATGAAGATTTGCATTTTG 342425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149788157823616