Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq786 174 1e-38 seq2476 86.0 4e-12 >seq786 Length=828056 Score = 174 bits (192), Expect = 1e-38 Identities = 392/580 (68%), Gaps = 12/580 (2%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 |||| |||| ||| || || | || |||||| | |||| || || | |||| ||| | Sbjct 610673 TGGGGAAGG-TCTTGGTTCTCGCTGAAGCTGAATTCTCAGTGGCTCGATATGATTCAGAT 610615 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | | || | ||||| ||| |||||||| || || || | || || || | || | Sbjct 610614 AAATACGTGCATTTCCCAAAGTATGGACAAAATCACCTGGCTTCAGGCCTGTGATGTGTG 610555 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||| | || || || || | ||| ||||| ||||| || || | ||||| | Sbjct 610554 CAATCATGGAGGTAAGCAGGGCATAACAGGCAATGTTGAAGGGCACACCCAGGCCCATAT 610495 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || ||||||||||| || || || || ||||| | | ||| || || ||||| Sbjct 610494 CTCCT-GACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACATAGAATTGACAG 610436 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || | ||| ||||| | || || ||| | |||||| ||||||||||| || | | Sbjct 610435 AGGGCATGGCAAGGAGGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCCAGGCACATATG 610376 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 | | ||||| || |||||| |||| || ||||||||||| || Sbjct 610375 GTTAATATTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCT 610316 Query 25747 ACCCCCATCCCCGAGTAGTCTG-CCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCA 25805 || || |||||||| |||| ||| |||| |||| |||||||| |||| ||||| Sbjct 610315 ACTCCTTGGCCCGAGTAATCTGAATCTC-TGTCTTTGTAGTCTGCTCCAAAATGTCTCCA 610257 Query 25806 CTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCT-CA---AAGCCCCTCT 25861 || ||| || || ||||| || ||||| ||| | ||||| | || || ||| Sbjct 610256 CTAGAAACCATAAACCGGGCCCAGGTC-CCA---TTCCTGTCATGCAGAGAATCCCAGGC 610201 Query 25862 TATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 25921 | ||| |||| ||| ||| |||||||| ||||| || | || |||| ||| || | Sbjct 610200 TGTCCGAAAAATCTAGGGACCCATTGGCATCCCATATTCTCACTCCCTCGGAGGACAGTT 610141 Query 25922 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 25961 || |||||||| ||| ||| |||||||||| ||| Sbjct 610140 GCTTACCATTTGTGGAGCCTTTGATAAACCACAGCAACTC 610101 >seq2476 Length=158986 Score = 86.0 bits (94), Expect = 4e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| |||||||| |||| ||||||||||| || || || || || ||||| Sbjct 43729 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 43670 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || | | | || | || ||| | |||||||| |||| ||| |||||||| | Sbjct 43669 CCCTTCCTGTC-GAGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCAT 43611 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||| || | || ||||| ||| || ||||| | |||||||| || Sbjct 43610 CCCATATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAGCC 43562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339685118352096